-
After the tutorial instruction of the Biomarker discovery, the command work, but does not display the different phyla according to the color of the legend
> p2
-
Hi,
I read your idea for a contact tracer app with interest and wondered if we could be of assistance. I run Internet businesses in the UK, and have some experience with app development.
I was…
-
I was trying to install MicrobimeAnalystR, and have tried through devtools and git, and tried building through R but all have the same error:
dependency 'Tax4fun' is not available for package 'Mi…
-
Just curious, what is the relationship between `taxa` and `kamapu/taxlist`? The focus of the two packages seems somewhat different. Perhaps we could say `taxa` is focused on *beta taxonomy* and `taxli…
-
We are getting closer to being able to separate out the lineage stuff from the revindex stuff in LCA, so we could envision combining searches on signatures and SBTs with taxonomic reporting (where ava…
-
Here is the error
```
> ps_obj #Data quality control
> library(metacoder)
> obj$data$otu_counts
> print(obj)
1186 taxa: aab. Bacteria, aac. Bacteroidota ... cjf. uncultured_delta, cjl. un…
-
The taxon_ids that are present in the otu_table/tax_data tables are different, but related to the taxon_ids in the tax_table/diff_tables created by coercing the phyloseq object into a taxmap object as…
-
I have been thinking about how to make all of the `taxa` classes most useful and I think I have come up with a way to reorganize things that will make things more natural and R-like, while increasing …
-
I am following the example analysis from this site:
https://grunwaldlab.github.io/metacoder_documentation/example.html
Everything works fine, until I get to the Alpha Diversity section and try to…
-
```r
library(metacoder)
x