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Cross link to #672
There has been much discussion about a ``microbiome`` class, the latest being in #805.
Resulting from [pco/issues/22](https://github.com/PopulationAndCommunityOntology/pco/iss…
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At the Plant Biology retreat I talked with many people about clustering methods of RNAseq data. I propose those interested can form a group to discuss clustering options/caveats/resources/tutorials/c…
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I think the current default is 1e8, with 4 tables, which is 50MB.
At some point I calculated the number of protein k-mers in ENSEMBL human as ~4 x 10^7, so 10^8 is a pretty good upper bound, and …
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Hi Qiyun,
I've tried to use HGTector to look for HGTs in 4 fish species using the pre-built default database. While search worked OK I didn't get any close and distal hits when running 'hgtector an…
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Seedorf, H.
Griffin, N. W.
Ridaura, V. K.
Reyes, A.
Cheng, J.
Rey, F. E.
Smith, M. I.
Simon, G. M.
Scheffrahn, R. H.
Woebken, D.
Spormann, A. M.
Van Treuren, W.
Ursell, L. K.
Pirrung, M.
Robbins-Piank…
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@jnmaloof Can you push ../output/TimeCourseDGE_LRT.Rdata ? I need DEG data from time-course. Thanks, kazu
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Hi,
Thank you for the fantastic work. However i feel confused about some details:
1. I check the **TableS2**, the sums of each sample are different, like this:
![image](https://github.com/yge15/…
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Pull Request #5 implements PHP-curl module to get the questions of hangman from a public API server. But we need to find a suitable API server which gives the project a freedom of use with reasonable …
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## Test cases
Linting
```bash
$ linkml lint ancient.yml
/home/james/git/mixs-minas/extension-ancient/src/mixs/schema/ancient.yml
warning Enum 'DamageTreatmentEnum' does not have recommend…
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Hi,
I have some trouble understanding the differences in classification rates between your GTDB 207 release Kraken database and the widely used maxikraken db from 2019, which is roughly half the si…