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There are some issues with this training that I collect here to fix step-by-step.
* In the preprocessing part, all fastq outputs go into multiQC, but since multiQC only shows one output for identical…
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Hi,
Thank you for a great resource for CAZyme annotation and substrate prediction. I was wondering since the annotation is trained on human gut microbiome (GMGC), would you recommend running it on …
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- [ ] GNPS FBMN Networking Job
- [ ] qza for microbiome
- [ ] taxa annotation table
- [ ] Known associations between microbiome and metabolome
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I have tried running scaffold a few times on a sample, and I keep getting an error. The details are below.
During scaffold, the following command failed with return code -11:
> > /opt/metAMOS/metAM…
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Hello Prof. Yu,
I find your clusterProfiler (http://yulab-smu.top/clusterProfiler-book/) a useful tool and tried to follow the tutorial.
Since I am working on the gut microbiome and have KEGG pathwa…
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Hello! I'm using v0.9.3 I got an error in the `rule extract_leftover_reads_wc` step.
yml:
```
samples:
- ckd_AA_RX_25_31201053301001_LP_550_C1_L2_R128
outdir: outputs.ckd/
sourmash_databas…
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In OHMI, we currently assert 'host-microbiome interaction' as a subclass of GO 'interaction with host'. However, this assertion is not a good fit because the term 'host-microbiome interaction' focuses…
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Orally administered neohesperidin attenuates MPTP-induced neurodegeneration by inhibiting inflammatory responses and regulating intestinal flora in mice – Dewei He – Food Funct.
https://pubs.rsc.org/…
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Tumor microbiome diversity influences papillary thyroid cancer invasion - Lijuan Yuan - nature
https://www.nature.com/articles/s42003-022-03814-x
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Connect NMDC EDGE to core NMDC orchestration services
NMDC EDGE61 is currently powered by a cluster computing service managed by SDSC. We will implement
automation functions in NMDC EDGE to execute wo…