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Hi Dr Wang,
MTA is really a nice R package for longitudinal microbiome data analysis. While I found there were some errors with the example data in the MTA-manual.pdf.
First, when generating tw…
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Hello,
I'm new user of metacoder() and has been following the workshop material "Analysis of Microbiome Community Data in R"
Thanks for making the examples available!
> library(metacoder)
Loadi…
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The following table references chapters from [The Bioconductor 2018 Workshop Compilation](https://bioconductor.github.io/BiocWorkshops/).
You can see the workshop schedule that I developed [on the …
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For an analysis I've been working on, I had originally used a normal ANOVA to compare relative abundance among samples at higher taxonomic level (only 10 taxa). I also did the same thing for 12 of the…
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Hi all,
I found several opinions about the rarefy_even_depth procedure and also in the manual it is stated that the procedure is not advocated.
I am a beginner in microbiome analysis and I started…
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I have tried using the web application but I keep getting the error “An error has occurred. Check your logs or contact the app author for clarification.” I didnt receive any logs. I modified the input…
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Hi,
I'm following the ["Workflow for Microbiome Data Analysis"](http://web.stanford.edu/class/bios221/MicrobiomeWorkflowII.html) to analyse some 16S and ITS datasets. I'm unsure about the effects t…
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The report is listed here:
Traceback (most recent call last):
File "./Script.py", line 4029, in
main(sys.argv[1:])
File "./Script.py", line 122, in main
output_log=open(split_output_…
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Thanks you for developing such a great software.
In our analysis , we observe structural zeros where in on group (e.g., healthy)
we have [0, 0, 0, 0, 0, 1, 0, 0] for the abundance of species X and…
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Would be nice to have some test data that is not to big to reduce runtime but where we know what the expected result is. Even more important when it comes to the statistical analysis!!