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Hello,
It would appear that there are [some protocols](https://www.science.org/doi/10.1126/science.adf8486) out there that combine 10X barcoding with long reads. Their analysis workflow has them pr…
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This is an example image and explanation posted on MiXCR website. I could not fully comprehend what the threshold was accomplishing.
In general, during refineTagsAndSort, it seems to correct hug…
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Hello,
While running MiXCR4.1.2 I ran in an issue with 2 of my files where the .clns file was produced but the rest of the steps stop working. Here's the output
```
Assembling initial clonotypes:…
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Dear immunarch team,
thank you for the user-friendly and highly useful package.
After loading 10x VDJ data `filtered_contig_annotations.csv` via `repLoad`, I run into problems when running `repGer…
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Hi Dr. Nazarov,
When I plot by grouping method (.by = "group"), however, there is an unknown group NA existing in my graph. pleas see attached. I checked my metadata, no other grouping informatio…
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Hi,
Sorry for spamming the issues. I am having an error come up whenever I try to add a whitelist.
essentially the run report gives me no additional explanation other than:
failed: 11 at run…
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## Error while running exportPlots shmTrees
`mixcr exportPlots shmTrees -m metadata_part1.tsv --node-color condition --ids 1424 part1_trees.shmt Mutant_shm_trees_1424.pdf`
**_Error while runnin…
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Can mixcr analysis single chain Fragment variable (scFv) within which both V region of heavy and light change are linked by a linker sequence.
d-jch updated
3 months ago
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Hi,
command,
mixcr exportClones -vIdentityPercents -vBestIdentityPercent -dIdentityPercents -dBestIdentityPercent -jIdentityPercents -jBestIdentityPercent test.contigs.clns clones.tsv
clones_IG…
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Hi,
I have a matched RNA-seq / WGS - seq whole-blood dataset with other data indicating high lymphocyte burden. I used mixcr analyze shotgun as recommended with both datasets.
I have a general…