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Submitting Author: Emily Jane McTavish (@snacktavish)
All current maintainers: Emily Jane McTavish (@snacktavish), Luna L. Sanchez Reyes (@LunaSare)
Package Name: Physcraper
One-Line Description of…
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Dear Fukushima-san,
Thank you for the great tool. While I was learing this analysis with my data, I wasn't sure how to interpret the result correctly.
- Input file:
tree file: iqtree, midpoint ro…
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## User story
>As a curator
>I want the post-upload script to update the md5sum values or file sizes from the server to the database
>So that I can get those metadata into the database in an auto…
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Hello PANDA dev team,
First of all, thank you for continuing to develop this great package!
I am currently fitting multiple `fit_env` models with different paleoclimate (temperature) reconstru…
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**Submitting author:** @wrightaprilm (April Wright)
**Repository:** https://github.com/wrightaprilm/treesiftr
**Version:** v1.0.0
**Editor:** @juanklopper
**Reviewer:** @ethanwhite, @rachelss
**Archiv…
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I noticed this in rotl, but it's actually in the base API, too.
For example, from https://github.com/OpenTreeOfLife/germinator/wiki/Studies-API-v3#find_studies, it says
*Example command:*
…
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Hi @hdrabkin
For the MF refactoring @thomaspd and I noticed a number of terms that are directly under GO:0003824 catalytic activity and that could perhaps be integrated under one of the terms that…
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I'm trying to run cactus for the first time, and it's not happy with the Newick tree I gave it.
This is the tree I'm using, obtained from NCBI Taxonomy:
```
(Homo_sapiens:4,Gallus_gallus:4,((Ac…
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**Date accepted:** 2022-12-30
Submitting Author Name: Cristian Román-Palacios
Submitting Author Github Handle: @cromanpa94
Repository: https://github.com/cromanpa94/phruta
Version submitted: 0.1.0…
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When running` treetime 0.10.0 ` with the following command:
`/home1/jh212a/.local/bin/treetime --aln /home5/nCov/Joseph/Phylogeny/GISAID_1Feb2023/analysis/alignment/Scotland89220_greatancestoralign…