OpenTreeOfLife germinator issues

OpenTreeOfLife / germinator

miscellaneous scripts and data for concerns that span more than one of the Open Tree code repositories: integration tests, system statistics, etc.

BSD 2-Clause "Simplified" License

21 stars 7 forks source link

issues

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Searches on names are not working

#167 bomeara closed 1 year ago
1
Update shared apache config to match newer deployments and phylesystem-api

#166 jimallman opened 1 year ago
0
Update germinator deployment for modern Ubuntu

#165 jimallman opened 2 years ago
1
Revise all download links to use HTTPS

#164 jimallman closed 1 year ago
1
Question: will the synthetic tree be updated again?

#163 cleopatra17 closed 3 years ago
2
Fix path to taxo-browser (always the same)

#162 jimallman closed 4 years ago
0
wrong user name for path to taxonomy cgi script on frontend machines

#161 mtholder closed 4 years ago
2
Make sure we are starting a NEW pserve.

#160 bredelings closed 4 years ago
1
Make sure we are starting a NEW pserve.

#159 bredelings closed 4 years ago
0
perhaps store the last version of otc-tol-ws executable

#158 mtholder opened 4 years ago
0
perhaps kill pserve before killing otc-tol-ws during deploy

#157 mtholder opened 4 years ago
0
update docs on files.opentreeoflife.org

#156 mtholder opened 4 years ago
0
Migrate oauth to GitHub app

#155 jimallman closed 4 years ago
3
Easter fix

#154 jimallman closed 4 years ago
0
Restrict http verbs

#153 kcranston closed 8 months ago
10
Correctly handle multiple installed Pythons

#152 jimallman closed 4 years ago
0
Restore web2py session sweepers

#151 jimallman closed 4 years ago
0
Feedback issues could contain markup for machine readable tests

#150 jar398 opened 4 years ago
2
opentree11.4 changes added to `ot-synthesis-v10.4.md`

#149 bredelings closed 4 years ago
2
Save a lot of time by not building restbed test programs.

#148 bredelings closed 4 years ago
0
Python3 rebase2

#147 snacktavish closed 4 years ago
0
Python3 rebase

#146 snacktavish closed 4 years ago
0
Otindex redirect

#145 snacktavish closed 4 years ago
2
Otindex redirect

#144 snacktavish closed 5 years ago
1
Otindex compatibility

#143 snacktavish closed 4 years ago
1
Support for API utility methods in v3

#142 jimallman closed 5 years ago
0
Fix all inbound URLs to use our preferred hostname

#141 jimallman closed 5 years ago
2
need to add installation of python redis wrapper to deploy script

#140 mtholder opened 6 years ago
0
Use systemd to manage daemons (for restarts, etc.)

#139 jimallman closed 4 years ago
5
Ad-hoc synthetic-tree URLs should follow some reasonable convention

#138 jimallman opened 6 years ago
4
Use 422 instead of 400 when request is syntactically correct

#137 jar398 closed 6 years ago
2
oti (neo4j) fails to start, but it doesn't wait for 120-second timeout

#136 jimallman closed 6 years ago
6
Mendeley papers list

#135 jar398 closed 7 years ago
1
add Mammalia, Tetrapoda to monophyly tests

#134 kcranston closed 4 years ago
0
new crt and pem file

#133 kcranston closed 7 years ago
0
documentation of config files

#132 kcranston opened 7 years ago
0
should be 9.1, not 8.0, in link

#131 jar398 closed 7 years ago
0
Ot9.1 releasenotes

#130 kcranston closed 7 years ago
0
release note opentree9.0

#129 kcranston closed 7 years ago
0
Get NCBI to link out to Open Tree

#128 jar398 opened 7 years ago
0
Plan for moving files server to S3

#127 jar398 closed 4 years ago
5
Move files.opentreeoflife.org to S3

#126 jar398 opened 7 years ago
6
link supporting_studies ids to supported nodes in induced_subtree

#125 arlin opened 7 years ago
0
add taxonomic-vs-phylogenetic distinction to induced_subtree

#124 arlin opened 7 years ago
0
API v4 tweaks for a synth tree that deals with _incertae sedis_ taxa

#123 mtholder opened 7 years ago
2
Someone should back up files.opentreeoflife.org

#122 jar398 closed 7 years ago
4
Restart apache when updating neo4j databases.

#121 jimallman closed 7 years ago
0
Add otindex when installing phylesystem-api

#120 kcranston closed 7 years ago
0
400 bad request vs. 404 for missing tree

#119 jcavner opened 7 years ago
0
Remove all 'translate' logic from run_tests.sh

#118 jar398 closed 7 years ago
2