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@galyea123 emailed about this question:
I thought to ask you if it will be possible to add other links (ref) to your has dbxref section. Specifically, MedlinePlus which has patient-friendly inform…
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OGMS takes two strings that are part of non-ontological discourse that have complicated but often interchangeable usage and imposes ontological commitments on them. This leads to a lot of confusion.
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1. coronavirus genes.
2. terms of the symptoms and signs
3. different level of illness in this NIH treatment guidance https://www.covid19treatmentguidelines.nih.gov/critical-care/
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@mbrush
hpoa.ttl (exclusively) uses this unresolvable @base iri as a predicate 49,148 times:
https://monarchinitiative.org/frequencyOfPhenotype
followed by object literals such as:
```
…
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I am looking at the slurp file : https://github.com/monarch-initiative/mondo-ingest/blob/main/src/ontology/slurp/doid.tsv
Many of the terms in this list (suggested to be new terms in Mondo) already…
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It would be useful if MONDO included a way to distinguish between a disease entity and a disease grouping. Currently the only way to do this is to check for subclasses/types of a disease; however, th…
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E.g. https://monarchinitiative.org/gene/NCBIGene%3A2263, diseases tab
This is confusing for anyone coming to the system and confusing to me too.
First of all, the reference is the same for all assoc…
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## Objective
Clear and agreed standardized curation, contribution, and governance processes are needed for MONDO and associated disease annotations to become a global community resource. We will cr…
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This is following up on a conversation at the curation call on May 11th about the EveryCure ranking project. We're trying to query translator TRAPI endpoints looking for ranks for drug-disease pairs. …
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I have a corpus of ~75,000 abstracts that I want to make a KG out of using OntoGPT. After 4 hours, it only got through 50 documents -- not super promising!
I took a look through the docs to see if …