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We don't see the version of msprime that the docs are for any more - something has change in the JupyterBook config.
This may be an issue with the upstream build in the website repo, though
Rela…
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When packaging tskit for nixpkgs ([see here](https://github.com/NixOS/nixpkgs/blob/master/pkgs/development/python-modules/tskit/default.nix)) I noticed that the python API tests folder was not include…
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For instance:
```
>>> ts = msprime.simulate(10)
>>> ts.tables.metadata = b'abc'
>>> ts.tables.metadata
b''
>>> ts.tables.metadata_schema
>>> basic_schema = tskit.MetadataSchema({'codec': 'j…
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Hi there,
I am trying to set up a package that uses pysim and thus kastore. The package (shadie) setup is via anaconda: `conda create -n shadie pandas numpy toyplot toytree altair msprime pyslim ts…
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Following up on the discussin about the Conda recipe at #7, I found that these commands are sufficient to make the `ms2chromosomes.py` script be compatible with Python 3:
```
sed -i.bak 's|\t| …
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Right now going between marginal trees just draws a fresh tree. It would be great to add an animation of the process -- called an SPR for subtree pruning and regrafting. I already have some ideas on h…
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In https://github.com/tskit-dev/tskit/pull/2381 @petrelharp pointed out that there are potentially 2 different ways of simplifying while keeping nodes which are partially coalescent and partially unar…
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I tried to update the .toml config to use my own simulated .trees files. I changed it to:
```
[sim.tranche]
# The labels and modelspec(s) for each tranche. The network will be trained to
# classif…
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It's unclear to me if I need to install SLiM separately from stdpopsim. My guess is that if I install via conda, it will install a working SLiM version for me, but if I install via pip, I will have to…
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Is there a method when simplifying a tree sequence to remove all unary nodes except the recombination nodes (a middle ground between ts.simplify(keep_unary=False) versus ts.simplify(keep_unary=True))?…