-
Hi,
I have a 5.5 GB OWL file "umls.owl". When I run
`robot convert --input umls.owl --output umls.json`
on a machine with 392 GB of RAM (and with '-Xmx390G' passed to java), I get the following…
-
-
org.monarchinitiative.phenol.base.PhenolRuntimeException: Error loading JSON
at org.monarchinitiative.phenol.io.OntologyLoader.loadGraphDocument(OntologyLoader.java:94)
at org.monarchinitiative.ph…
-
## Overview
I had an issue where I had an invalid Obograph that crashed LinkML, and Chris already [put in a fix](https://github.com/linkml/linkml/issues/1156) to change this field from required to op…
-
Building obographs requires Java 8 at the moment. Running on Java 11 gives this error:
```
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-javadoc-plugin:2.9:jar (attach-javadocs) on…
-
`sssom parse` gives a `Duplicate URI prefixes` error when there are overlapping uri expansions with different prefixes between an input `metadata.yml` file and the default prefixes when using the `-C …
-
While testing for https://github.com/RTXteam/RTX-KG2/issues/296, I found that multi_ont_to_json_kg.py fails:
```
+ set -o nounset -o pipefail -o errexit
+ [[ /home/ubuntu/kg2-build/umls_cuis.tsv ==…
-
I'm trying to convert [EDAM.owl](http://edamontology.org/page#Download) _(Always the latest stable version, in OWL format)_ into JSON format using [ROBOT](http://robot.obolibrary.org) which in turn is…
-
## Overview
I am converting an OWL file to Obographs JSON. I was then using that JSON for something else, and I encountered an error because `null` was not anticipated. I'm not sure if this is (a) a …
-
## Overview
I am converting an OWL file to Obographs JSON. I was then using that JSON in OAK, which attempted to do some loading using `linkml-runtime`. `linkml-runtime` encountered an error because …