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monarch-initiative
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phenol
phenol: Phenotype ontology library
https://phenol.readthedocs.io/en/latest/
BSD 3-Clause "New" or "Revised" License
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Onsets
#467
pnrobinson
opened
4 weeks ago
0
moving to obg-reader
#466
iimpulse
closed
1 month ago
1
Release v2.1.1
#465
ielis
closed
4 months ago
0
Extend `Aspect` enum with "Past medical history"
#464
iimpulse
closed
4 months ago
0
Release v2.1.0
#463
ielis
closed
5 months ago
0
moving to a simpler implementation
#462
iimpulse
closed
5 months ago
0
java.lang.IllegalAccessError - MinimalOntologyLoader
#461
pnrobinson
closed
2 months ago
4
Address HpoCategoryMap
#460
iimpulse
closed
5 months ago
0
Release 2.0.5
#459
ielis
closed
8 months ago
0
Augment `OntologyGraph` API
#458
ielis
closed
8 months ago
0
Update pre-computation of IC MICA values
#457
ielis
closed
9 months ago
0
Add support for serialization of `GeneIdentifier`s
#456
ielis
closed
9 months ago
0
Release v2.0.4
#455
ielis
closed
9 months ago
0
Update dependencies
#454
ielis
closed
9 months ago
0
Sub ontology graph
#453
ielis
closed
9 months ago
0
leakage
#452
pnrobinson
closed
9 months ago
11
Update docs on `TermAnnotation`
#451
ielis
closed
9 months ago
0
Remove deprecated APIs
#450
ielis
opened
10 months ago
0
Update dependencies
#449
ielis
closed
9 months ago
1
Implement mono graph
#448
ielis
closed
9 months ago
0
Add exact matches to Term data model and parsers
#447
matentzn
opened
10 months ago
1
update documentation to mkdocs and redo tutorial
#446
pnrobinson
opened
10 months ago
0
Modify OrphaGeneToDiseaseParser to avoid associating genes with grouping diseases
#445
cmungall
opened
12 months ago
1
csr limitation
#444
pnrobinson
closed
9 months ago
2
Release 2.0.3
#443
ielis
closed
1 year ago
0
Allow to opt out of the compatibility checks.
#442
ielis
closed
1 year ago
0
Add ontology checks
#441
ielis
closed
1 year ago
0
Require `MinimalOntology` instead of `Ontology` in `phenol-annotations`.
#440
ielis
closed
1 year ago
0
Fix the `pages.yml`.
#439
ielis
closed
1 year ago
0
Release 2.0.2
#438
ielis
closed
1 year ago
0
Setup deployment of documentation and javadocs to github.io
#437
ielis
closed
1 year ago
0
Implement ontology graph backed by a CSR connectivity matrix.
#436
ielis
closed
1 year ago
0
Bump h2 from 1.4.200 to 2.2.220
#435
dependabot[bot]
opened
1 year ago
0
Release v2.0.1
#434
ielis
closed
1 year ago
0
Update dependencies
#433
ielis
closed
1 year ago
0
Setup serialization of `Identified` concepts
#432
ielis
closed
1 year ago
0
AnnotationFrequency
#431
pnrobinson
closed
10 months ago
2
ontology version
#430
pnrobinson
closed
10 months ago
1
prototype CSR class
#429
pnrobinson
closed
1 year ago
4
Let's remove guava from phenol
#428
pnrobinson
closed
10 months ago
1
Release v2.0.0
#427
ielis
closed
1 year ago
0
deprecating phenotype writer, changing hpoa disease loader to handle …
#426
iimpulse
closed
1 year ago
0
Enhancement/hpoa format
#425
iimpulse
closed
1 year ago
0
obsoleting classes used for the small files and not needed for phenol…
#424
pnrobinson
closed
1 year ago
3
Obsolete Terms
#423
iimpulse
closed
10 months ago
1
Allow dropping non-propagating relationships during ontology loading
#422
ielis
closed
1 year ago
0
Add `precompute-resnik` command
#421
ielis
closed
1 year ago
0
Release `v2.0.0-RC5`
#420
ielis
closed
1 year ago
0
making qc better, adding tests
#419
iimpulse
closed
1 year ago
0
Offer versions in data containers/resource objects
#418
ielis
closed
1 year ago
0
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