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Hello,
I stumbled upon your great plugin and try to incorporate it into a bigger workflow.
A quick overview:
- run Cellprofiler with Cellpose on a whole 384 plate to generate segmented ROIs with …
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### Short title
Publishing FAIR Datasets from Bioimaging Repositories
### Project Description
The [Image Data Resource (IDR)](https://idr.openmicroscopy.org/) is home to 13 million multi-dime…
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Hello,
I have an issue when I try to save ResultsTable on OMERO, whatever if I use a macro or a groovy script
I [ attached ](https://github.com/GReD-Clermont/omero_batch-plugin/files/10207003/Ome…
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From https://www.openmicroscopy.org/qa2/qa/feedback/31187/
```
Traceback (most recent call last):
File "/opt/omero/venv_web/lib64/python3.6/site-packages/django/core/handlers/exception.py", l…
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- [ ] Expose option to force layers to be loaded as numpy arrays (non-lazily)
- [ ] Add a thread worker for the run function in case loading is slow (or some other method to not freeze the main threa…
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Hi,
We have an Omero server V5.3.1 (I know it is old!) to upload 100K+ images, and have recently encountered some issues with it.
Before I start, the config file looks like below:
```
./omer…
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```
omero login
Previously logged in to outreach.openmicroscopy.org:4064 as trainer-1
Server: [outreach.openmicroscopy.org:4064]
```
See https://forum.image.sc/t/download-full-projects-with-the…
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We have a lot of requests for additional objects in the figure, not just OMERO Image panels:
- Labels: https://trello.com/c/wtu7IVuN/10-stand-alone-labels
- Attachments (png etc): https://trello…
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During our recent ansible configuration of OMERO I had to do some less than desirable things to make it work because some of the configuration can not be done idempotently.
Examples:
When configurin…
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See suggestion on https://github.com/IDR/SubmissionWorkflow/pull/25#discussion_r485778995
Explore the feasibility of adding the lines
```
export PGPASSWORD=$(/opt/omero/server/OMERO.server/…