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### Description
@jeffng-or @precisionmoon @maliberty I generally run with REMOVE_ABC_BUFFERS=1, because otherwise floorplan can easily be "stuck forever" on this step.
Here is one example today …
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Thank you for the great tool!
It seems to be working perfectly for me but I would like to request a feature implementation.
Would it be possible to add a column of in-frame Ribo-seq (not TI-seq) c…
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Error code from run through conda installation. Input was a faa file with ORFs from Anvio.
(magiclamp) sean-mini-server:2022_PCC_ManuscriptWork sean_server$ MagicLamp.py LithoGenie -bin_dir bins -b…
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- [x] extract 3' UTRs
- [x] Perform NLP analysis
(retrieve for every gene we have the UTR)
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Hello Lex,
I'm adjusting your Gene_mining.slurm script from `S19_genome_mining_and_gene_identification/scripts`
to mine mammal immune genes but I got stuck at the `extract_fasta` step.
I assume thi…
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Hi, @apcamargo
Hello, the results I ran here only have protein sequences and no cds sequences. Can this software get the corresponding cds sequence codes?
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Hi,
Sorry for this basic level question, I am still a novice with bioinformatics.
When I attempt to run 3UTR_orf_20170816.pl as:
perl 3UTR_orf_20170816.pl -i test.fa -d /home/hayden/Downloads/E…
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Hello,
I wanted to ask if there is an available way to use the OpenROAD-flow scripts and be able to transfer the LEF/DEF contents and use it for Circuit Training. So far I have been trying to use the…
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Why does a transcript sequence assembled by Trinity.fasta have many stop codons in the middle?
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This is a requested feature for the taxon assignment phase of the autometa pipeline (Thanks @tderond for bringing this to my attention).
This would involve outputting an additional column or colum…