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Expected Behavior
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If there are repeat measures for a specific observation unit/trait combo, then the phenotype download w…
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Generate JSON Mapper for a pleiotropy chart like the ones on the landing pages for the phenotypes
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Hi, I am trying to run GEM analysis, but it keeps showing an error about phenotype file. I have attached my code here. Do you know what is my problem here?
singularity exec \
> -B /humgen/ManningL…
lc491 updated
2 months ago
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needed for a number of issues
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Expected Behavior
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Create a generic data file parser that could be used with all of the file upload functions that will s…
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- [ ] include gene name with allele in variant column
- [ ] need to figure out how to annotate NOT phenotypes. - this paper has NOT phenotypes
10.17912/micropub.biology.000367. perhaps we can add a…
kyook updated
3 years ago
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Hi, is it possible to use coMethDMR to identify differentially methylated regions associated with dichotomous/categorical (e.g. case-control status) phenotypes?
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single allele phenotype:
Suggest:
deletion/null expression
sequence alteration
wt (overexpression)
?
multigene phenotype
multiple deletions
sequence alteration + deletion
multiple sequence …
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(I need to find instructions!)
https://pombase.github.io/canto_tutorial/phenotypes/genes_alleles_genotypes.md
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_from Mondo Medical Expert Meeting (230223):_
We need to
- [ ] make a list of "seizure" terms
- [ ] review whether these terms are disease or phenotype
@sabrinatoro and @pnrobinson will work o…