-
The scripts use the now obsolete term 'FBdv:00007008 occurrent' as parent term to all allowed developmental qualifiers, preventing their usage in phenotype curation (see #2414)
1. Replace 'FBdv:000…
vmt25 updated
3 years ago
-
The BioGRID database:
https://thebiogrid.org/
has recently started curating phenotypes resulting from CRISPR screens in human cell lines and have compiled the results of their curation into the …
-
We need to ensure that all traits (from OBA and/or VT) can be reasoned to be subclasses of UPHENO:0001001. This may require a new subclass axiom.
This may be related to #140 and #142.
As suggeste…
-
We have species-neutral traits in OBA (all kingdoms) and TO (plant traits). OBA can be mapped to EFO, ATO, VT
What should the relationship be between OBA and upheno?
-
IGSF members are in a flat hierarchy:
....is\_a PR:000000001 \! protein
.....is\_a PR:000001089 \! immunoglobulin superfamily member 2 \*\*\*
.....is\_a PR:000001090 \! immunoglobulin superfamil…
-
Hello Everyone! I am here submitting several relations to the RO including:
isAnatomicalEntityFor
- **def**:A relation describing an anatomical feature of the referenced object with a materi…
-
Hi all,
I've recently been having a discussion regarding uPheno with @matentzn, who requested I write this up as a uPheno issue here.
We've put a lot of work into creating gold-standard (manual)…
-
How will we get the onset pattern to reason properly?
[disease_onset.yaml](https://github.com/obophenotype/bio-attribute-ontology/blob/master/src/patterns/dosdp-patterns/disease_onset.yaml)
te…
-
Input phenotype profiles for analysis from a phenopacket file.
-
Currently there are different variants of ontologies available:
- https://oboacademy.github.io/obook/explanation/owl-format-variants/
Depending on the use case, a user may wish to use different…