monarch-initiative owlsim-v3 issues

monarch-initiative / owlsim-v3

Ontology Based Profile Matching

16 stars 5 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Bump gson from 2.2.4 to 2.8.9 in /owlsim-core/bin

#109 dependabot[bot] opened 2 years ago
0
Bump gson from 2.2.4 to 2.8.9 in /owlsim-core

#108 dependabot[bot] opened 2 years ago
0
Bump jena-core from 2.11.2 to 4.2.0 in /owlsim-core/bin

#107 dependabot[bot] opened 2 years ago
0
Bump jena-core from 2.11.2 to 4.2.0 in /owlsim-core

#106 dependabot[bot] opened 2 years ago
0
Migrate to central logging

#105 seandavi opened 2 years ago
0
If backend framework has a plugin for prometheus metrics, consider adding a prometheus metrics endpoint

#104 seandavi opened 2 years ago
0
Add request-level logging for long-running queries

#103 seandavi opened 2 years ago
0
Bump commons-io from 2.2 to 2.7 in /owlsim-core/bin

#102 dependabot[bot] opened 3 years ago
0
Bump commons-io from 2.2 to 2.7 in /owlsim-core

#101 dependabot[bot] opened 3 years ago
0
Bump ant from 1.8.2 to 1.10.9 in /owlsim-core

#100 dependabot[bot] opened 3 years ago
0
Bump ant from 1.8.2 to 1.10.9 in /owlsim-core/bin

#99 dependabot[bot] opened 3 years ago
0
Bump junit from 4.12 to 4.13.1

#98 dependabot[bot] opened 3 years ago
0
Bump ant from 1.8.2 to 1.9.15 in /owlsim-core/bin

#97 dependabot[bot] closed 3 years ago
1
Bump ant from 1.8.2 to 1.9.15 in /owlsim-core

#96 dependabot[bot] closed 3 years ago
1
Monarch OwlSim API is timing out.

#95 monicacecilia closed 5 years ago
2
Documentation of similarity measures (and REST services)

#94 matentzn opened 6 years ago
0
Building javadoc fails due to missing parameter descriptions

#93 matentzn opened 6 years ago
0
Phenotype sort

#92 jmcmurry opened 6 years ago
1
Use requests in golr exporter

#91 kshefchek closed 6 years ago
2
Low phenodigm scores for disease matching

#90 kshefchek opened 6 years ago
0
Explore many-to-many matches for profiles

#89 jmcmurry opened 7 years ago
3
Add option in services layer to include pairwise matches in all phenotypes

#88 cmungall opened 7 years ago
0
Add prefix filter to service layer

#87 kshefchek opened 7 years ago
0
For Hs configuration, add option for diseases and genes

#86 kshefchek closed 7 years ago
1
Factor in phenotype frequency

#85 jmcmurry closed 7 years ago
1
Docker image root ontology

#84 jnguyenx opened 7 years ago
0
Command error in repository Readme

#83 ManavalanG closed 7 years ago
1
58 docker biolink update

#82 jnguyenx closed 7 years ago
0
services: should be possible to match by individual IDs as well as class IDs

#81 cmungall opened 7 years ago
0
Consider p value calculation for IC based sim calculations

#80 kshefchek opened 7 years ago
2
[#78] allow labels to be loaded as tsvs

#79 jnguyenx closed 7 years ago
0
Add a way to load label tsv along with data tsv

#78 jnguyenx closed 7 years ago
0
Implementing meta-information for annotations of objects

#77 drseb closed 7 years ago
6
Implemented prefix filter,

#76 cmungall closed 7 years ago
0
Add additional filters for match service

#75 kshefchek opened 7 years ago
0
implemented a simple boolean matcher.

#74 cmungall opened 7 years ago
2
[#72] added service for single entity

#73 jnguyenx closed 7 years ago
3
add ontomatch: 1 entity vs ontology

#72 jnguyenx closed 7 years ago
1
Adding ability to load individuals from in-memory data as well as off-disk.

#71 julesjacobsen closed 7 years ago
7
57 loader refactor

#70 julesjacobsen closed 7 years ago
1
Add paging to ontomatch service

#69 cmungall opened 7 years ago
5
WIP: Adding metadata required for release on mvncentral

#68 cmungall opened 7 years ago
0
[#58] Added Dockerfile

#67 jnguyenx closed 7 years ago
1
Unecessary auto-(un)boxing of intgers in BMKnowledgeBaseOWLAPIImpl

#66 julesjacobsen closed 7 years ago
1
Provide better documentation for how to use owlsim-v3 as a java library

#65 cmungall opened 7 years ago
1
[#62] moved guice modules away from core

#64 jnguyenx closed 7 years ago
0
Make specific routes for the different matchers

#63 cmungall opened 7 years ago
0
Leakage of owlsim-server guice configuration into owlsim-core

#62 julesjacobsen closed 7 years ago
7
ProfileMatcher should have a isNegationAware method

#61 julesjacobsen opened 7 years ago
0
WIP: first pass at frequency-awareness

#60 cmungall closed 7 years ago
6