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monarch-initiative
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owlsim-v3
Ontology Based Profile Matching
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Add capability to breakdown similarity results by symptom or high level terms
#59
cmungall
opened
7 years ago
1
Docker file / image for owlsim3 server
#58
tudorgroza
closed
7 years ago
2
Refactor or better document loaders
#57
cmungall
opened
7 years ago
10
Implement bayesian frequency awareness
#56
cmungall
opened
7 years ago
5
Align with drseb code
#55
cmungall
opened
7 years ago
0
Allow querying by individual id
#54
cmungall
opened
7 years ago
0
Empty matches with simple configuration file
#53
jnguyenx
opened
7 years ago
1
[#44] almost working generated json. Blocked by a swagger-core bug
#52
jnguyenx
closed
7 years ago
3
Parameter choice leading to '-Inf' in NaiveBayesFixedWeightThreeStateProfileMatcher
#51
drseb
opened
7 years ago
0
Unused code elements in NaiveBayesFixedWeightThreeStateProfileMatcher
#50
drseb
opened
7 years ago
2
change method-name converIndexSetToBitmap to convertIndexSetToBitmap
#49
drseb
closed
7 years ago
0
[#44] smartapi reported errors
#48
jnguyenx
closed
7 years ago
0
swagger update
#47
jnguyenx
closed
7 years ago
2
Update swagger to fix encoding issue
#46
jnguyenx
closed
7 years ago
0
Port annotation sufficiency from owlsim2
#45
cmungall
closed
7 years ago
1
Register with smart API
#44
cmungall
opened
7 years ago
1
Add routes to service to introspect details of loaded ontologies
#43
cmungall
opened
7 years ago
1
Adding enrichment service
#42
cmungall
closed
7 years ago
0
matching between ontology classes (not instances)
#41
cmungall
closed
7 years ago
0
Create route to show all best ontology class matches between pairs of ontology terms in two ontologies
#40
cmungall
closed
7 years ago
0
Add service to return list of matchers plus their characteristics
#39
cmungall
opened
7 years ago
0
services: return more informative error messages
#38
cmungall
opened
7 years ago
0
24 curie
#37
jnguyenx
closed
7 years ago
0
[#33] configure Jackson to ignore empty beans
#36
jnguyenx
closed
7 years ago
0
too much logging info
#35
cmungall
opened
7 years ago
0
services: change parameter names in match
#34
cmungall
opened
7 years ago
0
swagger is producing invalid json
#33
cmungall
closed
7 years ago
1
Add compare attribute sets to REST service layer
#32
kshefchek
closed
7 years ago
2
Write some examples/tests that demonstrate some general fuctionalities
#31
cmungall
opened
7 years ago
0
Phenopacket reading
#30
balhoff
opened
8 years ago
3
Fixed error from import of missing class.
#29
balhoff
closed
8 years ago
1
Read phenopackets
#28
balhoff
opened
8 years ago
4
Add OMIA species to OwlSim calculations
#27
jmcmurry
opened
8 years ago
0
Error running Makefile
#26
balhoff
opened
8 years ago
3
Test resource missing
#25
balhoff
closed
8 years ago
0
Implement CURIE handling
#24
cmungall
closed
7 years ago
11
Full test v3 vs v2 for both speed and accuracy
#23
cmungall
opened
8 years ago
0
Bridge to owlsim2 service layer
#22
cmungall
opened
8 years ago
0
RoaringBitmaps?
#21
julesjacobsen
opened
8 years ago
1
Reciprocal ranking of models
#20
jmcmurry
opened
8 years ago
1
adding owlsim logos for light/dark backgrounds
#19
jmcmurry
closed
8 years ago
0
testSelfComparisonKS in ICDistributionTest sometimes fails
#18
cmungall
opened
8 years ago
0
Adding labels to phenotype list
#17
yuanzhou
opened
8 years ago
0
Should MatcherModule move from services to core?
#16
cmungall
closed
9 years ago
4
ICDistributionTest.testSelfComparisonKS sometimes fails
#15
cmungall
opened
9 years ago
0
add license
#14
nlwashington
opened
9 years ago
3
Handling apparent contradicitions with negation data
#13
cmungall
opened
9 years ago
11
Move repo to monarch org
#12
cmungall
closed
8 years ago
0
Command line options to get LCS, IC and similarity measures without annotations
#11
jkh1
opened
9 years ago
0
refactor Matchers with Comparator methods
#10
nlwashington
opened
9 years ago
5
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