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monarch-initiative
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owlsim-v3
Ontology Based Profile Matching
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Bump gson from 2.2.4 to 2.8.9 in /owlsim-core/bin
#109
dependabot[bot]
opened
2 years ago
0
Bump gson from 2.2.4 to 2.8.9 in /owlsim-core
#108
dependabot[bot]
opened
2 years ago
0
Bump jena-core from 2.11.2 to 4.2.0 in /owlsim-core/bin
#107
dependabot[bot]
opened
2 years ago
0
Bump jena-core from 2.11.2 to 4.2.0 in /owlsim-core
#106
dependabot[bot]
opened
2 years ago
0
Migrate to central logging
#105
seandavi
opened
2 years ago
0
If backend framework has a plugin for prometheus metrics, consider adding a prometheus metrics endpoint
#104
seandavi
opened
2 years ago
0
Add request-level logging for long-running queries
#103
seandavi
opened
2 years ago
0
Bump commons-io from 2.2 to 2.7 in /owlsim-core/bin
#102
dependabot[bot]
opened
3 years ago
0
Bump commons-io from 2.2 to 2.7 in /owlsim-core
#101
dependabot[bot]
opened
3 years ago
0
Bump ant from 1.8.2 to 1.10.9 in /owlsim-core
#100
dependabot[bot]
opened
3 years ago
0
Bump ant from 1.8.2 to 1.10.9 in /owlsim-core/bin
#99
dependabot[bot]
opened
3 years ago
0
Bump junit from 4.12 to 4.13.1
#98
dependabot[bot]
opened
3 years ago
0
Bump ant from 1.8.2 to 1.9.15 in /owlsim-core/bin
#97
dependabot[bot]
closed
3 years ago
1
Bump ant from 1.8.2 to 1.9.15 in /owlsim-core
#96
dependabot[bot]
closed
3 years ago
1
Monarch OwlSim API is timing out.
#95
monicacecilia
closed
5 years ago
2
Documentation of similarity measures (and REST services)
#94
matentzn
opened
6 years ago
0
Building javadoc fails due to missing parameter descriptions
#93
matentzn
opened
6 years ago
0
Phenotype sort
#92
jmcmurry
opened
6 years ago
1
Use requests in golr exporter
#91
kshefchek
closed
6 years ago
2
Low phenodigm scores for disease matching
#90
kshefchek
opened
6 years ago
0
Explore many-to-many matches for profiles
#89
jmcmurry
opened
7 years ago
3
Add option in services layer to include pairwise matches in all phenotypes
#88
cmungall
opened
7 years ago
0
Add prefix filter to service layer
#87
kshefchek
opened
7 years ago
0
For Hs configuration, add option for diseases and genes
#86
kshefchek
closed
7 years ago
1
Factor in phenotype frequency
#85
jmcmurry
closed
7 years ago
1
Docker image root ontology
#84
jnguyenx
opened
7 years ago
0
Command error in repository Readme
#83
ManavalanG
closed
7 years ago
1
58 docker biolink update
#82
jnguyenx
closed
7 years ago
0
services: should be possible to match by individual IDs as well as class IDs
#81
cmungall
opened
7 years ago
0
Consider p value calculation for IC based sim calculations
#80
kshefchek
opened
7 years ago
2
[#78] allow labels to be loaded as tsvs
#79
jnguyenx
closed
7 years ago
0
Add a way to load label tsv along with data tsv
#78
jnguyenx
closed
7 years ago
0
Implementing meta-information for annotations of objects
#77
drseb
closed
7 years ago
6
Implemented prefix filter,
#76
cmungall
closed
7 years ago
0
Add additional filters for match service
#75
kshefchek
opened
7 years ago
0
implemented a simple boolean matcher.
#74
cmungall
opened
7 years ago
2
[#72] added service for single entity
#73
jnguyenx
closed
7 years ago
3
add ontomatch: 1 entity vs ontology
#72
jnguyenx
closed
7 years ago
1
Adding ability to load individuals from in-memory data as well as off-disk.
#71
julesjacobsen
closed
7 years ago
7
57 loader refactor
#70
julesjacobsen
closed
7 years ago
1
Add paging to ontomatch service
#69
cmungall
opened
7 years ago
5
WIP: Adding metadata required for release on mvncentral
#68
cmungall
opened
7 years ago
0
[#58] Added Dockerfile
#67
jnguyenx
closed
7 years ago
1
Unecessary auto-(un)boxing of intgers in BMKnowledgeBaseOWLAPIImpl
#66
julesjacobsen
closed
7 years ago
1
Provide better documentation for how to use owlsim-v3 as a java library
#65
cmungall
opened
7 years ago
1
[#62] moved guice modules away from core
#64
jnguyenx
closed
7 years ago
0
Make specific routes for the different matchers
#63
cmungall
opened
7 years ago
0
Leakage of owlsim-server guice configuration into owlsim-core
#62
julesjacobsen
closed
7 years ago
7
ProfileMatcher should have a isNegationAware method
#61
julesjacobsen
opened
7 years ago
0
WIP: first pass at frequency-awareness
#60
cmungall
closed
7 years ago
6
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