-
### Problem Description
When running rotary on specific FASTQ files, I get the following error:
```
WorkflowError in rule stitch_medaka in file /home/lee_bergstrand/rnd/rotary/rotary/rules/./p…
-
'modulation by symbiont of host signal transduction pathway' -> perturbation of host...
'modulation by symbiont of defense-related host salicylic acid-mediated signal transduction pathway' -> pertur…
-
Following the similar efforts to rationalise the alpha-ketoglutarate dehydrogenase complexes and TCA cycle complexes (see #26122 and #26882), I propose we do something similar for respiratory chain co…
sjm41 updated
4 months ago
-
While evaluating how Pling! deals with circularly permuted sequences, I came across a case where it computes the containment similarity of two sequences that are 99.22% similar as 0%. In the example a…
-
Curated by @MPiovesana
https://canto.phi-base.org/curs/bf15e81bf1ab6473
-
Beginning with sequence-based searches of the literature via PaperBLAST and using the sequences acquired from PomBase, UniProtKB
-
1. The ability to specify the ~plasmid~ promoter (mostly of these are stored in names, background and comments)
~2. If overexpression is selected, the ability to specify the "fold" overexpression …
-
**What is the Feature Related To? Please Provide a Description.**
Add access to additional bakta parameters at runtime:
--complete
--compliant
--gram
--keep-contig-headers
--skip-gap
…
-
https://canto.phi-base.org/curs/eba8868426ff6fa8
-
Hi,
I installed Bakta recently using mamba.
I downloaded the DB using the built-in command.
I am trying to run mamba on a series of fasta files:
for f in *fasta
do
sample=${f//.fasta/}
…