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https://www.pombase.org/gene/SPBC13G1.05
NOT
GO:0045724 | positive regulation of cilium assembly | IEA with PTHR13317:SF4 | GO_REF:0000118
Note to self, add taxon restriction
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consider merging
increased subtelomere-derived RNA level
increased subtelomeric heterochromatin RNA level
_Originally posted by @ValWood in https://github.com/pombase/fypo/issues/44…
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(I couldn't see an issue for this)
We need to export the new interactions that are attached to phenotype annotations.
The documentation needs updating too: https://github.com/pombase/canto/wiki/…
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https://www.pombase.org/reference/PMID:30992049
https://www.pombase.org/reference/PMID:32441227
https://www.pombase.org/reference/PMID:31131414 (connecting F to P- some tethering)
https://www.pomba…
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Legacy annotation is confusing, especially the binding, and modified forms
https://www.pombase.org/reference/PMID:11702950
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Needs to be taken care of during overhaul
1. _trxA/trxB_
- Annotations for `trxA, trxB` not present in the GAF
- However, they show up on EBI GOA with UniProt IDs
2. _Selenocysteine_
- Hard-c…
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We should look into bringing enrichment into PomBase
Options:
https://metacpan.org/release/GO-TermFinder
hierarchal filter, best per parent
https://biit.cs.ut.ee/gprofiler_archive2/r1760_e93_e…
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check these annotations.
https://www.pombase.org/reference/PMID:32355220
https://www.pombase.org/reference/PMID:34292936
I'm not sure that the isochore formation is decreased compared to wt, i…
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When a gene product has a paralog,
we need some way of linking the orthologs
Implement count column for orthologs and paralogs
Example
YJR066W matches both Tor1 and Tor2
But you don't know …