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Very helpful program! I could use a little help interpreting the output, though:
A) Could someone please provide a guide to the functional categories in the gene output (unfortunately named 'pp' in…
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As I have to prepare some virus test data sets anyway I just run 4 assemblies through WtP. Honestly, I do not exactly know what to expect as an outcome from the files (I have to clarify with some guy …
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I saw that you filter the VirSorter output to only collect phages from the files
* VIRSorter_cat-1.fasta
* VIRSorter_cat-2.fasta
````
cat !{results}/Predicted_viral_sequences/VIRSorter_cat-[1,…
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Only prophage_tbl.txt as output, no prophage.tbl file on output folder.
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Dear Simon,
Thank you for your generous help with VirSorter earlier.
I am sorry to bring up another issue, but when I have
tried the new VirSorter script (i.e. the one made available after iss…
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Dear Simon,
Thank you for your kind help with issue#45 earlier this week.
Currently I am trying to predict viral regions within contigs using your VirSorter
and I was wondering if there is a wa…
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Shouldn't these terms be under GO:0098019 virus tail, major subunit:
GO:0098027 virus tail, sheath- the definition should specify myophage
GO:0098028 virus tail, shaft
GO:0098026 virus tail, tube-…
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## Motivation
Some phages carry anti-CRISPR genes which are capable of deactivating a CRISPR-Cas defense system in bacteria. Fun fact: anti-CRISPRs were discovered at the University of Toronto! Her…
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To provide a more extensive description of the prophages found (positions of targets identified, etc.)
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Hi Gustavo,
I have read your article recently published in BiorXiv on ProphET with great interest, and I am currently trying to install it but I am encountering a few issues.
After cloning the r…