simroux VirSorter issues

simroux / VirSorter

Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)

GNU General Public License v2.0

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issues

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conda shows Perl_xs_apiversion_bootcheck

#91 Nivskrishnan05 closed 1 year ago
0
I have warnings in the error file that I do not understand.

#90 ewars opened 1 year ago
2
Missing output data

#89 xiaozhangzhang123 opened 1 year ago
1
Cannot execute wrapper..

#88 franztastic closed 2 years ago
5
Run termination

#87 18AS closed 3 years ago
1
Prophage regions

#86 niamhlacy opened 3 years ago
1
error during virsorter2 run

#85 javadgh6 closed 3 years ago
1
Where to download files needed for --data-dir parameter

#84 flannsmith opened 3 years ago
1
Split a large fasta file

#83 chenyj8 closed 3 years ago
1
Metric_files/VIRSorter_affi-contigs.tab "start-end-length" issues:

#82 ameisesophie closed 3 years ago
5
VIRSorter_phage-signal.csv and VIRSorter_affi-contigs.csv missing, with no predicted viral sequences

#81 Handymanalan closed 3 years ago
3
Multiple assembly files

#80 TJrogers86 closed 3 years ago
3
Update wrapper_phage_contigs_sorter_iPlant.pl for HPC and cloud running.

#79 burgsdorf closed 3 years ago
1
VIRSorter_global-phage-signal.csv and Predicted_viral_sequences directory empty

#78 sxh1136 closed 3 years ago
6
TypeError: reduction operation 'argmax' not allowed for this dtype

#77 neptuneyt closed 3 years ago
1
linear & circular Labeling chaos In the resulting Genebank file

#76 fangzhou233 opened 4 years ago
1
"No such file or directory" error for Contigs_prots_vs_Phage_Gene_unclustered.tab, VIRSorter_affi-contigs.csv, VIRSorter_phage-signal.csv

#75 mshamash closed 4 years ago
5
Addressing a common problem with BioPerl installation: "Can't locate Bio/Seq.pm in @INC"

#74 deanna-kim opened 4 years ago
6
Getting 500 Error from Zenodo data repo?

#73 maximilianpress closed 4 years ago
3
Different number of Viral contig

#72 zhanwen-cheng opened 4 years ago
1
Step 1 failed

#71 kks-vir closed 4 years ago
10
Perl: symbol lookup error, Perl_xs_apiversion_bootcheck

#70 JiqiuWu opened 4 years ago
1
Detection of eukaryotic viruses?

#69 rprops opened 4 years ago
2
VirSorter predicts prophage that is longer than the actual contig size

#68 hoelzer closed 4 years ago
3
Document "output_directory/logs/err" write "Error: Incomplete database file. Database building did not complete successfully".

#67 xdli009 opened 4 years ago
3
Difficulty in Understanding VIRSorter out file.

#66 Raashu911 opened 4 years ago
2
New anvi-export-gene-calls output kills virsorter_to_anvio.py

#65 jarrodscott opened 4 years ago
1
Issue running virsorter with diamond using conda and wrapper perl script.

#64 elsherbini closed 4 years ago
3
Step1 failed.!

#63 Raashu911 closed 4 years ago
21
Step1 failed.!

#62 Raashu911 closed 4 years ago
0
What is the meaning of parameter "--data-dir"?

#61 xdli009 opened 4 years ago
1
interpretation of Virsorter output

#60 sbeiow opened 4 years ago
2
empty results because mga_linux_ia64 could not been executed

#59 bognabognabogna closed 4 years ago
3
Use of uninitialized value in addition (+) (error?)

#58 jarrodscott opened 4 years ago
10
Step 1 failed: VIRSorter_prots.fasta and VIRSorter_nett_filtered.fasta were not found

#57 asttra opened 4 years ago
17
please check external command status

#56 EricDeveaud opened 4 years ago
1
document version to use for external tools

#55 EricDeveaud opened 4 years ago
0
check for all required tools at startup.

#54 EricDeveaud opened 4 years ago
0
Step 1.3 error

#53 DNADoubleFelix closed 4 years ago
2
Multiple errors given by the new VirSorter script

#52 genomics-pixel closed 4 years ago
9
Backtracking to original contig name?

#51 jdwinkler-lanzatech closed 4 years ago
3
Only one predicted viral sequence

#50 thr44pw00d opened 4 years ago
2
Custom Phage Sequence

#49 ZarulHanifah opened 4 years ago
1
Multiple predicted viral regions in similar area of contig.

#48 genomics-pixel closed 4 years ago
8
Error in gene prediction

#47 Xiaojun928 opened 4 years ago
9
How to retrieve the coordinates of "viral" predicted regions

#46 genomics-pixel closed 4 years ago
24
Outputs from Perl script and Cyverse version does not match

#45 genomics-pixel closed 4 years ago
6
Excessively large 'err' log file when running with custom phage db (--cp flag)

#44 mshamash closed 5 years ago
2
Custom database - How to?

#43 MeggyC opened 5 years ago
11
Minor usability updates

#42 telatin closed 5 years ago
1