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Sometimes entities, especially protein complexes, are composed of a large number of parts. These can obscure the ability to view and edit models in the Noctua editor. Rather than defaulting to showi…
goodb updated
2 years ago
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From Natalie's suggestion:
Allow entering naked namespace values, complete to NS:VAL and then provide completion suggestions taking into account possible functions that can wrap the NS:VAL based on t…
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"Docking" used to be a Topic (EDAM 1.12) but was deprecated, and merged into the notion of [Molecular modeling](http://edamontology.org/topic_2275). Yet it's suggested as a topic in https://github.co…
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Hi Sébastien,
I am not getting any results for -gene-ontology and I have followed the instructions from your 2012 paper git repo. It seems that the cds sequence part of the script was not working due…
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At present, the code for `AtomicConvModel` and its associated `ComplexNeighborListFragmentAtomicCoordinates` featurizer is really messy. A big part of this has to do with the explicit handling of prot…
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cramg updated
3 years ago
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Hi there
I have the results from the CPDB and in several rows within the genes columns, there are 'integrin'. I'd like to know which integrin gene is that? As you know, there are several integrin g…
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For initial assessment of the best strategy of migrating OmniPath to BioCypher, we will build a pipeline with secondary adapter and create a representative schema of the OmniPath KG to be developed. D…
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From GOC meeting in Cambridge, Oct 2017:
Spaceholder ticket. Please formulate the issue(s); make a proposal for next GOC mtg at NYU 2018.
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At least for the MCSS selector, there's no need to load the structures and prep before choosing which structures to use - particularly if you have hundreds and you're only going to dock to a few, it m…