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### Describe the bug
#the guideline in README is
##Run GalaxyPepDock
* Usage: $GALAXY_HOME/bin/GalaxyPepDock [-h] [-t TITLE] [-p INPUT PDB File] [-s INPUT Sequence File]
* Input argument…
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Hi, recently I buy lot of memory to do bigger structure interactions, and I have the impression Alpha Pulldown cannot take more than 10 proteins (here 20). Maybe it's cause the name is too long ?
T…
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**Aim:**
This issue addresses how to apply LigGrep to filter through docked ligand poses to check that they retain key interactions with the protein that are observed in crystallographic fragment-p…
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Hi,
I'm interested in capturing the exact state of the receptor after flexible docking.
It seems there is no description about that on docs, but is there any way to do that with vina?
If not…
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Hi @nslavov ,
Thank you very much for your contribution regarding the single-cell protein data. I believe it will be of great assistance to my research. I am a Ph.D. candidate in bioinformatics, and…
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In general, integration of the TOPS code with other java protein data models (Jmol, BioJava, ...). This issue on BioJava suggests drawing TOPS (or other topology diagrams) from BioJava:
https://githu…
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Hi everyone,
In this project, we have a bunch of experimental data on the binding of small molecules to WDR91. Many of the molecules are in nice matched pairs, in which the molecules differ by a si…
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> http://dx.doi.org/10.1371/journal.pone.0141287
>
> **Motivation:** We introduce a new representation and feature extraction method for biological sequences. Named bio-vectors (BioVec) to refer to…
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As a result of the GO-CAM specs call today, we made the decision that cellular anatomical structures represent a location in GO. Gene products and complexes will be located in those anatomical structu…
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## 論文リンク
https://www.nature.com/articles/s41586-021-03819-2
(Supplementary Information も同ページにリンクがある)
## 公開日(yyyy/mm/dd)
2021/07/15
## 概要
タンパク質の構造予測コンペである CASP14 において他チームを圧倒した精度を達成した AlphaFol…