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KosinskiLab
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AlphaPulldown
https://doi.org/10.1093/bioinformatics/btac749
GNU General Public License v3.0
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Added mmseqs2 template features to chopped objects
#374
dingquanyu
closed
6 hours ago
0
Merging individual monomer MSAs for multimer prediction
#373
denizkavi
opened
3 days ago
2
Update parse_fold
#372
dingquanyu
opened
1 week ago
1
Fix 362
#371
dingquanyu
closed
1 week ago
5
create_indvidual_features.py
#370
poojaparameswaran99
opened
1 week ago
2
Fix 367
#368
dingquanyu
closed
2 weeks ago
6
'ranking_confidence' is not in the result.pkl file after the update
#367
DimaMolod
closed
2 weeks ago
10
Rearange backend initialisation
#366
dingquanyu
closed
2 weeks ago
2
Convert predicted models to modelcif
#365
DimaMolod
closed
2 weeks ago
0
Update libffi version
#364
dingquanyu
closed
2 weeks ago
4
Clean duplicating functions/ redundant code
#363
DimaMolod
opened
2 weeks ago
0
Use DEFINE_list for model_names flag
#362
DimaMolod
closed
1 week ago
3
Fix 344
#361
dingquanyu
closed
2 weeks ago
0
Updated container creation scheme
#360
maurerv
closed
3 weeks ago
2
Runtime of each prediction
#359
what-is-what
closed
3 weeks ago
1
GPU seems not working when run_multimer_jobs.py
#358
HUST6324
closed
3 weeks ago
5
run_structure_prediction.py accepts comma separated list of input folds and optionally dedicated output_directories for each fold
#357
maurerv
closed
3 weeks ago
5
More exception in analysis pipeline
#356
dingquanyu
closed
3 weeks ago
0
Improve resume predictions
#355
DimaMolod
closed
3 weeks ago
4
343 replace this with non cctbx solution
#354
gchojnowski
closed
5 hours ago
0
Improve resume predictions
#353
DimaMolod
closed
2 weeks ago
1
Multiple feature directories
#352
DimaMolod
closed
3 weeks ago
2
Update example_1.md
#351
B0r1sD
closed
4 weeks ago
2
jackhammer error running test
#350
Clockris
closed
1 month ago
3
Add again --dry_run flag
#349
DimaMolod
closed
4 weeks ago
1
Now allow it to parse pLDDT values from bfactor
#347
dingquanyu
closed
4 weeks ago
0
Group unittests
#346
dingquanyu
opened
1 month ago
1
Update alphalink backend
#345
dingquanyu
closed
1 month ago
0
singularity error
#344
polya18
closed
2 weeks ago
20
Replace this with non-cctbx solution
#343
jkosinski
closed
5 hours ago
7
run_multimer_jobs issue
#342
J-Held
closed
1 month ago
5
Running calculate_mpdockq.py with only PDB
#341
busrasavas
closed
4 weeks ago
1
Add dropout
#340
jkosinski
opened
1 month ago
0
GPU not working when run_multimer_jobs.py
#339
polya18
opened
1 month ago
3
Update documentation request
#338
Clockris
opened
1 month ago
0
Too many proteins in one interaction ?
#337
Qrouger
opened
1 month ago
2
Add generation of JSON for AlphaFold server
#336
jkosinski
opened
1 month ago
0
using several GPUs on a single workstation
#334
errinaceus
opened
1 month ago
0
Improve pdb_analyser.py
#333
DimaMolod
closed
3 weeks ago
2
Make it possible to run create_individual_features.py with multimeric tempaltes using mmseqs2
#332
DimaMolod
opened
1 month ago
0
Fix interface measurements in the analysis pipeline
#330
dingquanyu
closed
1 month ago
3
pi-score outputs
#329
salomonssonj
closed
1 month ago
7
Multiple mmts
#328
DimaMolod
closed
1 month ago
3
Fix 292 and singularity image
#327
dingquanyu
closed
2 months ago
0
alphapulldown.utils.process_files automatically excludes permutation of the input elements
#324
maurerv
closed
2 months ago
1
predictions_with_good_interpae.csv
#323
DimaMolod
closed
2 months ago
0
Different behavior of the all_vs_all mode in AlphaPulldown 2.0.0 beta v2?
#322
TM-Hamm
closed
2 months ago
9
update tests and fixed create_notebook
#321
dingquanyu
closed
2 months ago
0
Flash attention?
#320
jkosinski
opened
2 months ago
0
operands could not be broadcast together with shapes - MMSEQ2
#319
rukibuki
opened
2 months ago
2
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