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Hi,
I'm trying to search an MS3-TMT file. Error is below. I generated the mzml using MSConvert but perhaps incorrectly. Also using runstart IC. MS2-TMT files processed fine.
Thanks,
Matt
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Hello,
Recently my FragPipe setup has had numerous issues with searches failing to complete without posting any error codes. They simply hang during some Philosopher step. To complicate everything …
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- quant isobaric fail because no reporter ions were detected. the parameters are the default for TMT10-MS3 workflow . I don't know what and if my parameters are wrong.
- log file
[log_2021-09…
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Hi,
I'm trying to isntall mzR on Ubuntu 20.04 but I get the following messages. (Bioconductor version: 3.12, R version > 4).
```
> * installing *source* package ‘mzR’ ...
** using staged installat…
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Hi All,
I'm trying to perform a closed search for a TMT16 workflow however I've got the same error as https://github.com/Nesvilab/MSFragger/issues/19 except using more recent updates of FragPipe an…
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I am attempting to quantify an experiment with heavy and light isotopic labels. When I run my file, I get an error that IonQuant returned a nonzero exit code. I have tried running the .raw and .mzML f…
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Dear Felipe,
I just noticed some inconsistent behaviour between the different report tsv tables when I wanted to investigate my decoys in more detail:
Primarily I noticed, that my decoys in the pr…
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Hi,
I want to use the MSfragger to bulid the DDA-based spectral library but found that no “library.tsv” file was generated in the result file. What could be the reason for this ?
I'm sure that …
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**Describe the bug**
I am following the instructions on "Running a FragPipe-equivalent workflow on Linux", here: [https://msfragger.nesvilab.org/tutorial_linux.html](url)
Specifically for Non-ion …
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Hi Nesvilab,
So I'm running IonQuant to compare the ratios of heavy and light labeled cysteines in this sample, but I keep getting this error; any idea how to circumvent it?:
2021-03-04 19:59:03 […