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1) There is a plot showing the distribution of positions in the BAM. This is useful, but I would see if it is possible to convert the x-axis from genomicPosition (which we need to use in the raw data)…
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编译 Launcher3-13-Qc 版本,报:“Error running 'Launcher3':Unable to determine activity name” 请教
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Pull one patient from Synthea data (lung cancer, if available) and perform QA/QC by manually mapping to KBs/reference DBs. Look for biomarkers, relevant pathways, etc. Reference the [KB figure](https:…
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### Description of bug
when i run command for genome assembly spades. py -1 (forward seq) -2 (reverse seq) -o output_directory after sometimes running it shows this error
"== Error == system cal…
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### To Do List
There are two versions of EXTEND needs to be checked.
**For the imputed version**
- [x] match sample ID with the pheno and DNAm, 928 samples left
- [x] check if the data has bee…
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# Description
- [x] display data in card view for all
- [x] display data in card view for flood
- [x] display data in card view for rain
- [x] scroll only the card
- [x] fix header and footer
- [x] cr…
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Hello,
Can someone help me to understand the QC process?
Based on this link:
https://www.bioconductor.org/packages/release/workflows/vignettes/GeoMxWorkflows/inst/doc/GeomxTools_RNA-NGS_Analysi…
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If there's interest, could look at other QC stats:
* ref distortion (make sure the first two b=0 have no in-plane distortion), currently we only output (ref distortion) / (eddy distortion)
* b=0 s…
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The question of whether a default UMI of 3000 is too high for QC?