FDA-ARGOS data.argosdb issues

FDA-ARGOS / data.argosdb

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Christie - update figures of the paper

#463 cwoodside1278 opened 2 days ago
0
Make a README file for the code that was added to the repo

#462 cwoodside1278 opened 4 days ago
0
Emma - draft HIVE3 protocol for the NCBI BioProject computations

#461 cwoodside1278 opened 5 days ago
2
Jonathon - HIVE3 CensuScope Blocker

#460 cwoodside1278 opened 5 days ago
1
Update the Schema to v1.6

#459 cwoodside1278 opened 2 weeks ago
0
Tutorial for FDA in HIVE3 computations.

#458 cwoodside1278 closed 2 weeks ago
2
Christie - Adding/editing a variable to the v1.6 data dictionary

#457 cwoodside1278 opened 3 weeks ago
3
Christie - Make updates to the paper per Jingyue's comments

#456 cwoodside1278 closed 2 days ago
3
Add Flu section to the paper

#455 cwoodside1278 opened 1 month ago
1
Change log for the latest data push

#454 cwoodside1278 closed 1 month ago
0
H5N1 flu strain selection for QC

#453 cwoodside1278 opened 1 month ago
2
Python script for HIVE3 json to tsv conversions

#452 cwoodside1278 closed 5 days ago
1
Robel - Check dataset sanity python script needs to be updated

#451 cwoodside1278 closed 1 month ago
1
Make an Onboarding Doc/Folder for ARGOS specifically

#450 cwoodside1278 opened 1 month ago
0
API Link for GISAID into HIVE3

#449 cwoodside1278 opened 1 month ago
3
Troubleshooting Protocol

#448 kee007ney opened 1 month ago
1
Xinyang's graphs for the FDA Meeting????

#447 cwoodside1278 closed 1 month ago
1
Christie - H5N1 information for the May FDA Meeting

#446 cwoodside1278 closed 1 month ago
1
Create June GitHub Task List

#445 cwoodside1278 closed 1 month ago
1
May FDA Meeting

#444 cwoodside1278 closed 1 month ago
1
HIVE3 error about 'failed to submit loading process'

#443 cwoodside1278 closed 1 month ago
1
Watch video of data push to understand

#442 cwoodside1278 closed 1 month ago
1
Verify the phred quality for HIVE2/3

#441 cwoodside1278 closed 1 month ago
2
Christie - Onboarding for Reilan

#440 cwoodside1278 closed 1 month ago
2
Christie- Biocompute poster for conference

#439 cwoodside1278 closed 1 month ago
1
christie - "no reference genome" HIVE3 issue

#438 cwoodside1278 closed 1 month ago
2
Joe - HIVE3 Figures for ARGOS Paper

#437 cwoodside1278 opened 3 months ago
2
Christie - Inability to Share on HIVE3

#436 cwoodside1278 closed 2 months ago
2
Christie- HIVE3 HIVEIDs in computation do not work due to downloader engine issue

#435 cwoodside1278 closed 2 months ago
1
Christie- Update the README to v1.6

#434 cwoodside1278 opened 3 months ago
2
Christie- March FDA Meeting presentation deck

#433 cwoodside1278 closed 3 months ago
1
Christie- Create April Task List

#432 cwoodside1278 closed 3 months ago
0
Christie - what can we add to argos.db to be publication ready.

#431 cwoodside1278 opened 4 months ago
1
Readme updates

#430 cwoodside1278 closed 4 months ago
0
Mazumder - organize documentation for the data dictionary and BCO updates

#429 penningtonea opened 4 months ago
5
Christie- Final Update of ARGOS Sharepoint

#428 cwoodside1278 opened 4 months ago
2
Christie- Create new 2024 FDA Slidedeck draft

#427 cwoodside1278 closed 4 months ago
1
Christie - Take recording, then closed captions, add to paper

#426 cwoodside1278 closed 3 months ago
3
Christie - Create March Task List

#425 cwoodside1278 closed 4 months ago
1
Find NCBI QC results on the website and compare to our NCBI_HIVE table

#424 cwoodside1278 opened 4 months ago
4
Try to run the argos pipeline via API scripts

#423 penningtonea opened 5 months ago
6
Emily - compare BLAST metrics between hive 2 and BLAST gui

#422 penningtonea closed 5 months ago
2
Christie - tell us how many assemblies from ARGOS project have been analyzed so far

#421 cwoodside1278 closed 4 months ago
1
Christie - Mapping of variables in HIVE3

#420 cwoodside1278 closed 3 months ago
4
Christie - push all data to data.argosdb

#419 cwoodside1278 closed 1 month ago
3
Christie - run all assemblies from argos in batch mode and collect data

#418 cwoodside1278 opened 5 months ago
4
Christie - Pick one assembly per genome and run 10 assemblies in batch mode and see if it works. First pick the ones which have only one assembly for that genus.

#417 cwoodside1278 opened 5 months ago
5
Christie - review hive3 QC and our current data dictionary to see if any update is needed in hive3

#416 cwoodside1278 closed 4 months ago
1
Christie - Analyze 2-3 assemblies in hive3 and see if it works okay

#415 cwoodside1278 closed 3 months ago
3
Christie - how many assemblies from ARGOS project have been analyzed so far

#414 cwoodside1278 closed 5 months ago
2