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working on a server with Ubuntu 22.04.4 LTS
conda 24.1.2 installed
I followed the instructions on https://docs.qiime2.org/2024.2/install/native/ and chose linux amplicon
* wget https://data.qiim…
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**Bug Description**
Biom import examples fails.
**Steps to reproduce the behavior**
1. Installed as follows:
```
$ wget https://data.qiime2.org/distro/core/qiime2-2023.7-py38-linux-conda.yml
…
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Hey HiFi team,
I am trying to run this nextflow pipeline on real data on HPC/slurm. I am able to run the test data successfully and run into the following error when I try to execute the pipeline w…
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### Checklist
- [X] I added a descriptive title
- [X] I searched open reports and couldn't find a duplicate
### What happened?
Installed miniconda:
```
wget https://repo.anaconda.com/miniconda/…
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**Describe the bug**
Trying to get the prepare set up so that we can have a dev environment for the shotgun distro. I'm seeing some issues with the Vega test for busco. It looks like the JSON has s…
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Hello!
In my current project, we used DADA2 on a set of 16S Full-length PacBio CCS reads including the Zymo Mock sample.
Read tracking showed that I lost ~50% of the reads after the filtering step…
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Hi - I'm running qiime2-2020.6 and I was wondering if the qiime sourcetracker2 gibbs plugging is available for this version of qiime2. I looked over a tutorial (pasted below) and through the qiime2 re…
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Hi all,
I experienced a long list of error when going through the [tutorial](https://github.com/biocore/gemelli/blob/master/ipynb/tutorials/IBD-Tutorial-QIIME2-CLI.md) of q2-gemelli, using QIIME2 v…
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**Bug Description**
Having a composite type where the parent type's attribute `filed_names!=None` and the child type has properties, in the keys of a `TypeMap`, will cause an error when calling the a…
Sann5 updated
8 months ago
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Hi,
Is it possible to install this package using the reticulate package in R?
I installed the dependency Cython `py_install("Cython")`, and when I tried to `py_install("gemelli")` I get the follo…