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**Describe the issue**
I am running RepeatModeler using the university cluster with my fungal genome (~46 MB). I used the following syntax below. It completed 2 rounds and still running. How lon…
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The idea is to collect as many annotations as possible and put then into a data store, like sqlite. Answering questions and querying should be separate tools on-top of this storage. Pretty much like […
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Here is a personalized video review
https://uw.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3692c33-b29b-44d9-ac2b-ac1540b518f1
1) The next step is to turn the blast out put into a genome featur…
sr320 updated
8 years ago
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Hi,
I am trying to open my repeatmasker output file using read_rm as in the tutorial but I keep getting this error:
Error in `str_trim()`:
! `side` must be one of "both", "left", or "right", not …
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Hi,
I've been trying to softmask a 40Mb algal genome (53 contigs) for a subsequent annotation.
First, I tried using funannotate mask (a wrapper for Repeatmodeler and RepeatMasker), it run 300h w…
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Hi, dear authors @mobilomics
I have two questions about the use of TEcandidates:
* First question.
My object of study is pig, I want to know how I can get the pig_rmsk_TE.gff3 from Repea…
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Hi,
I found that there are always too many LTRs no matter what sequences I provided.
For example,
1) helitronscanner(https://sourceforge.net/projects/helitronscanner/) results as input,
![imag…
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Hi. I am running RepeatModeler-2.0.1 on a 500Mb de novo assembly of an insect. It outputs a consensi.fa and I ran the RepeatClassifier script to classify the repeats.
`RepeatClassifier -consensi c…
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Hi,
We wanted to try xTea on a plant species. Is that possible or does it require a human reference?
Agnieszka
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Hi @abretaud, @nathanweeks, @johanneskoester, @kastman, @pvanheus, @jerowe, @bgruening and @ArneKr,
I ran Maker but I got the following error:
```
> qpeek 4702790.pbs
Possible precedence issu…