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Hello,
I have encountered an issue while trying to design oligos for my experiment. The script threw an IndexError, as shown in the output below.
The fasta file is the same I used for aligning, t…
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I am trying to control CPU usage for the DRAM.py distill pipeline on DRAM v.1.5.0 that I am using on DRAM.py annotate .tsv output from metagenome assembled genomes. As I am using a shared lab server w…
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```python
import sys; print(sys.version)
import platform; print(platform.python_imp…
veghp updated
3 weeks ago
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This might not be an issue for feature tables from genbank, but for other sources (for example from prokka), a particular row may contain more than two lines. For example in the following it would be …
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Hi @cpouchon,
I am trying to run test data in Orthoskim. I am following all steps according to provided tutorial. I have captured all sequences chloroplast_CDS, chloroplast_rRNA, chloroplast_tRNA, m…
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hello,
Both pip and conda install show different usages as compared to shown on the readme.
Conda install : https://anaconda.org/bioconda/rna-seqc
usage from conda install:
~/anaconda3/bin/r…
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Having problems to resolve the following error in the tutorial code:
```
rib = Ribosome(id='rib',
name='Ribosome',
kribo=12 * 3600,
kdeg=0.001,
…
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### Description of the bug
When a config variable uses `${projectDir}` in its definition, the `nf-core schema build` tool reports that the pipeline config does not match the schema and requests addin…
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Dear SortmeRNA group,
I am using SortmeRNA version 4.3.4 to extract 16S rRNA sequences from paired metagenome sequences and then using qiime2 to annotate these 16S rRNA sequences. But, I've annotated…
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Author Name: **Nadine Tatto** (Nadine Tatto)
Original Redmine Issue: 3279, https://redmine.open-bio.org/issues/3279
Original Date: 2011-08-10
Original Assignee: Bioperl Guts
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I have an infer…