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Hi ! I got an error when trying to read the Visium h5ad after cell2location
my script is :
```
# Import modules
import os
# silence scanpy that prints a lot of warnings
import warnings
…
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Hello,
When running runDWLSDeconv, I get the following error
```
Error in enrich_matrix[, ct_spot_k[m]] : subscript out of bounds
In addition: Warning messages:
1: In sparseMatrix(i = indices[…
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Hi, thank you very much for Moscot and Cellrank resources! I was wondering if you could please advise the best way to get around the "XlaRuntimeError: RESOURCE_EXHAUSTED: Out of memory while trying to…
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Hello,
I am trying to implement mixcr to analyze the scRNA-seq data produced using split-seq method (commercial version is called parse bio evercode WT).
We use adapters of the same length and stru…
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Hi,
Thank you for developing this helpful package! I am currently trying to optimize the number of clusters for a cell population using your package, but I've encountered an error that I'm having tro…
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https://mp.weixin.qq.com/s/ypXTR4hO2uDe5S-JHJsttQ
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Hi Onur,
This is a fascinating study on the deconvolution of bulk RNA-seq in AML. I am a postdoctoral researcher at the Chinese Institutes for Medical Research (CIMR).
Your code serves …
pyebo updated
2 months ago
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https://mp.weixin.qq.com/s/5Q-Ymo6X7zrFMyzrOqAfSQ
ixxmu updated
2 weeks ago
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Hi everyone! I'm Pau, a PhD student from [saezlab](https://saezlab.org/). We are mostly interested in extracting mechanistic insights from (single-cell) omics data and we would like to propose an Open…
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### Where to find help?
[Visualization by RStudio / Seurat](https://docs.google.com/document/d/1UJpRR7sV0CORjXrQn_OXljXX458NItE6_TEsygQJgHs/edit#bookmark=id.jb0ber9btvld )
[Link to What do you fin…