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I am running PBSV on a SLURM based compute node, my installation of PBSV is via the most recent docker image (run via singularity). I am using the mm10 genome from iGenomes for alignment and an mm10 s…
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Reports of failures at the spades step in bugs
toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.8.0
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Dear VG team
I want to use VG to genotype the copy number of the short tandem repeats (ATCATCATC) based on short reads.
In the alt field, each allele represents one specific copy number, such as: …
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This happens when I login the container, and can't quit by Ctrl-c.
My system is `Ubuntu 12.04`, kernel is `3.8.0-25-generic`.
docker version:
```
root@wutq-docker:~# docker version
Client version: …
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![image](https://user-images.githubusercontent.com/54714639/138654482-7cdfe62f-7ad6-4e3d-9dfa-24f11d6fe967.png)
the results looks like strange,Why can sequences with length 1914830 be fully aligned t…
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Dear Tamara,
If I understand correctly the final results of found ITDs are in file `itds_collapsed-is-same_is-similar_is-close_is-same_trailing_hc.tsv`.
This file contains the following data (be…
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https://mp.weixin.qq.com/s/0dnsDUTmItDcT72bs3ZReA
ixxmu updated
2 years ago
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Hi, I made this mod a long time ago and use it, it aroused a lot of interest among people, I will get a lot of reviews and emails about it (not all people write on GH, because they do not know how to …
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Follow up from #247.
The repeat expansion pipeline has two ways to determine whether a variant is a repeat expansion event:
* By looking at the variant's name and trying to decode the HGVS-like no…
tskir updated
3 years ago