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Dear developers,
thanks for providing this great tool! I have used your package for a while now, but when thinking a bit more about my results, I was wondering how exactly the ligand-target-matrix…
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I'm a new user of LIANA+ and currently working with a large dataset that includes approximately 300 samples (around 1.5 million cells). I have access to 4 GPUs, each with 48 GB of memory. I’m consider…
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Hi,
I am very excited to use your package! I am analyzing some visium data and hoping to leverage the spatial information provided after mapping single cells back to their spatial location. I noti…
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**Describe the bug**
Hello, I have an issue with using 'run_model_bpa_bulk'. We have a bunch of different workspaces and datasets and would like to run the bpa rules across all of them. Some of the r…
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Hi, thank you for your work, which has made our single cell analysis much faster.
However, when the nnz of the matrix exceeds the maximum limit of 32 bits, the preprocessing process needs to be perfo…
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Summarize commonly used QC metrics in Single Cell data analysis
* Method 1
* Method 2
* Method 3
Recommended QC metrics/method for spatially-resolved data.
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> Single-cell transcriptome measurements can reveal unexplored biological diversity, but they suffer from technical noise and bias that must be modeled to account for the resulting uncertainty in down…
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Hello,
I have another quick question regarding the use of the method FUNNEl. Is the algorithm suitable for single cell data ( analysis is the study of transcriptomics at the single cell level.)?
…
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https://doi.org/10.1101/390153
> A fundamental problem in biomedical research is the low number of observations available, mostly due to a lack of available biosamples, prohibitive costs, or ethica…
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https://decoupler-py.readthedocs.io/en/latest/index.html