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Hello,
Hope you're doing well! I was wondering if it would be possible in the future to support custom moltypes, e.g. if I wanted to do a riff on the Dayhoff alphabet where arginines were a special …
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When we run:
```
scripts manysearch zip-with-manifest.zip zip-with-manifest.zip -o foo.csv
```
it works fine; but with
```
sourmash scripts manysearch zip-without-manifest.zip zip-without-manife…
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Hi, I was wondering if the gtdb reps 220 had been sketched (or is about to be)? Otherwise, would it be possible to provide/point to the command you use to do it? I imagine it's fairly straightforward,…
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**Related To**
- [ ] Bactopia
- [ X] Bactopia Tools
**Is this something you would like to see added?**
Yes -
New tables for checkm/ sourmash results for each strain. Its a convenience
…
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from slack conversation:
olga:is there a benchmarky paper showing sourmash’s performance in speed, cpu, memory, accuracy for contamination detection? trying to convince nextflow core devs to use it…
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As sourmash expands to consume many (but not all!) things, we are building many a utility script. For example,
subtract.py —
https://gist.github.com/ctb/a3aad5020039b014b26a4d7c2b097465
some h…
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On two different machines: `conda create -y -n KDE python=3.8` works just fine, but then installing the `--file requirements.txt` I get:
```
$ conda activate KDE
(KDE) e5-cse-mdkdk01:KEGG_data_extr…
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### Description of the bug
The pipeline appears to have a bug in the follow-up process. When executing the nextflow pipeline, the terminal behaves as if the process has stopped and overlaps the proce…
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it would be nice to be able to use the next release of khmer with the current version of sourmash, and I think right now sourmash depends on khmer.load_nodegraph which doesn't exist in master. maybe w…
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Command used:
```
nextflow run replikation/What_the_Phage -r v1.2.1 --setup -profile local,singularity -work-dir ./work --cachedir ./singularity_images
```
I have tried more than 10 times, del…