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Hello,
I am using escape with the following code:
obj.sub
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/vjcitn/xenLite
Confirm the following by editing e…
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It can be part of `plotSpatialFeature` and `plotLocalResult`, with one argument for which row geometry and another for which genes to plot. Then burning question: what palette to use to color the gene…
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Currently it is possible to shuffle rows in `spatialCoords`, so that these rows become out of sync with the rows in `colData`.
We could think about protecting against this in some way, either using…
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## Describe the bug
Thank you for your work! I wanted to report that no data object is returned with `fetch_data(type='spe').
### Provide a minimally reproducible example (reprex)
```
if (!r…
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Hi,
In my case, I ran into another error using the files from https://github.com/LieberInstitute/spatialLIBD/tree/RELEASE_3_14.
```bash
Rscript -e 'rmarkdown::render("spatialLIBD/vignettes/T…
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Please ask questions about how to use `spatialLIBD` on the
[Bioconductor Support Site](https://support.bioconductor.org) using the
appropriate tag(s) including the one for this package.
**Note**.…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/LieberInstitute/visiumStitched
Confirm the follow…
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Hi,
I’m new to processing 10x Visium HD data and have been following the Seurat Visium HD workflow without any issues until I reached the "RunBanksy" step. At this point, I received a warning mes…
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Hi,
I am working with ST data from https://www.10xgenomics.com/resources/datasets/human-cerebellum-targeted-neuroscience-panel-1-standard-1-2-0 .
When I run SpatialFeaturePlot() , I get the follow…