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ncborcherding
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escape
Easy single cell analysis platform for enrichment
https://www.borch.dev/uploads/screpertoire/articles/running_escape
MIT License
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Error in t.default(sc[[enrichment.name]]["data"]) : argument is not a matrix in performNormalization
#132
kangjiajinlong
closed
1 day ago
4
Interpretation of differential enrichment + visualizations
#131
satkinson0115
opened
3 days ago
2
Median values for heatmapEnrichment()
#130
ayin0510
closed
3 weeks ago
3
Results of getSignificance with ANOVA
#129
hwi1208
closed
3 weeks ago
1
Unable to find an inherited method for function ‘gsva’ for signature ‘"missing", "missing"’
#128
kangjiajinlong
closed
1 month ago
3
No escape.matrix or runEscape function
#127
kangjiajinlong
closed
1 month ago
1
Error when looking for Differential Enrichment using FindAllMarkers
#126
SunnyHelperT
closed
1 month ago
0
getSignificance() question
#125
ayin0510
closed
1 month ago
1
batch effects
#124
Flu09
closed
1 month ago
2
how to compare 2 conditions
#123
Sirin24
closed
1 month ago
5
update pull request for dev branch
#122
ncborcherding
closed
2 months ago
0
General question
#121
Sirin24
closed
2 months ago
2
runEscape() function not found
#120
ayin0510
closed
2 months ago
6
Question about NES
#119
alicekao1118
closed
2 months ago
2
performNormalization
#118
st-tky
closed
2 months ago
4
merging into devel
#117
ncborcherding
closed
2 months ago
0
runEscape with method="GSVA" takes more then 10h and did not finish
#116
al3xmlt030
closed
3 months ago
1
genesets from msigdb
#115
alicekao1118
closed
3 months ago
1
Issue with runEscape() and counts Layer
#114
monikaramos
closed
3 months ago
3
Merge pull request #109 from ncborcherding/dev
#113
ncborcherding
closed
3 months ago
0
update GSVA function with new name
#112
kew24
closed
3 months ago
7
Update performNormalization.R
#111
LinearParadox
closed
3 months ago
7
Displaying the clustering trees in `escape::heatmapEnrichment()`?
#110
denvercal1234GitHub
closed
3 months ago
1
updating scale.factor for normalizatrion
#109
ncborcherding
closed
3 months ago
0
Clarification on `scale.factor` in `escape::performNormalization`
#108
denvercal1234GitHub
closed
3 months ago
1
Error with Warning: longer object length is not a multiple of shorter object length in `escape::escape.matrix(normalize=T)`?
#107
denvercal1234GitHub
closed
3 months ago
9
Thoughts on cluster/celltype filtering
#106
LinearParadox
opened
3 months ago
1
runEscape not passing BPPARAM properly
#105
LinearParadox
closed
3 months ago
1
Error in .subscript.2ary(x, i, j, drop = drop) : subscript out of bounds
#104
denvercal1234GitHub
closed
4 months ago
2
Clarification on `groups` argument in `escape.matrix`
#103
denvercal1234GitHub
closed
4 months ago
1
Using normalised vs normalised values
#102
Shubhra1994
closed
4 months ago
1
Error in cnts[gene.set, ] : subscript out of bounds
#101
RosyGH
closed
5 months ago
4
an error keeps coming up every time I run escape.matrix or other functions in this package
#100
RosyGH
closed
5 months ago
3
Error with the vignette data with version seurat v5 (Error: unable to find an inherited method for function 'gsva')
#99
tetsy2
closed
5 months ago
3
minor changes to getGeneSet
#98
neanderthalensis
closed
6 months ago
0
Install issues + missing functions in installed package
#97
AndreaLGardner
closed
6 months ago
4
splitEnrichment with >2 levels
#96
jeremymsimon
opened
6 months ago
3
Seurat v4 compatibility with escape package
#95
dimitrisokolowskei
closed
7 months ago
2
Aboout function “runEscape” and “performNormalization”
#94
DylanGuo1101
closed
7 months ago
1
Error in using runEscape
#93
pushpinder-bu
closed
7 months ago
5
Error in runEscape
#92
BaluPai
closed
7 months ago
3
Significance Testing in Cell-Level
#91
cagataysahinn
closed
8 months ago
5
Feature Request: Significance Without Class Labels
#90
DarioS
closed
8 months ago
3
Error in .subscript.2ary(x, i, j, drop = drop) : subscript out of bounds
#89
Ahmedalaraby20
closed
8 months ago
6
ssGSEA Error About GSVA
#88
DarioS
closed
8 months ago
1
User Specification of cores Parameter is Seemingly Ignored
#87
DarioS
closed
8 months ago
1
Normalization error
#86
Sogand65
closed
8 months ago
3
Problem using runEscape() on HPC
#85
Sogand65
closed
8 months ago
1
Updating v1.99.1 for bugs and tests
#84
ncborcherding
closed
8 months ago
0
Error in (function (..., deparse.level = 1)
#83
Sogand65
closed
8 months ago
6
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