LieberInstitute spatialLIBD issues

LieberInstitute / spatialLIBD

Code for the spatialLIBD R/Bioconductor package and shiny app

http://LieberInstitute.github.io/spatialLIBD/

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issues

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[BUG] Reporting of Missing Genes in Spot Plots multi-gene functionality

#83 cyntsc opened 1 week ago
1
Stitched plotting

#82 lcolladotor closed 2 weeks ago
0
[Feature Request] Host Visium LS data through `fetch_data()`

#81 Nick-Eagles closed 2 weeks ago
0
[BUG] vis_grid_clus cannot handle logical variables

#80 lahuuki closed 1 week ago
1
[BUG] Fail to obtain the spe data of DLPFC

#79 YikaiLou closed 1 month ago
4
Add metric QC function

#78 lahuuki closed 1 week ago
0
[BUG] `sort_clusters` creates arbitary numeric seqences as legend labels in `vis_grid_clus` plots.

#77 boyiguo1 closed 1 week ago
1
upload multiple Visium samples to the spatialLIBD shiny app

#76 cathalgking opened 3 months ago
3
shiny_updates issues

#75 lcolladotor closed 3 months ago
4
Unable to deploy iSEE app to Shinyapps.io

#74 RyAMiller closed 4 months ago
1
Fail to obtain the spe data of DLPFC through fetch_data()

#73 yuansheng-peng closed 3 months ago
6
[BUG] Error during extract and reformat enrichment results when using `registration_wrapper`

#72 boyiguo1 opened 6 months ago
3
Error in loading app locally

#71 dimurali93 opened 7 months ago
1
Switch to using rlang and cli

#70 lcolladotor opened 7 months ago
0
Translate course and intro documentation to Spanish

#69 lcolladotor opened 7 months ago
0
Design a 2 day workshop / short course

#68 lcolladotor opened 7 months ago
0
Create video guide for spatialLIBD web applications

#67 lcolladotor opened 7 months ago
0
Add support for inspecting colors to visual impairment + guide for choosing colors

#66 lcolladotor opened 7 months ago
0
Allow users to write custom shiny code for web applications

#65 lcolladotor opened 7 months ago
0
Determine limits of dataset size that can be supported by shinyapps.io + document Amazon AWS deployment

#64 lcolladotor opened 7 months ago
0
Expand utilities for exploring spatial data

#63 lcolladotor opened 7 months ago
0
Modularize interactive code

#62 lcolladotor opened 7 months ago
0
Add support for non-Visium data and/or SpatialFeatureExperiment

#61 lcolladotor opened 7 months ago
3
Enhance frame limit detection

#60 lcolladotor opened 7 months ago
0
Create guide for shinyapps.io deployment

#59 lcolladotor opened 7 months ago
0
Refactor guide for external datasets

#58 lcolladotor opened 7 months ago
0
Add support for dream by Gabriel Hoffman

#57 lcolladotor opened 7 months ago
0
Improve data access organization and documentation

#56 lcolladotor opened 7 months ago
0
Deposit published data on ExperimentHub

#55 lcolladotor opened 7 months ago
0
Use ComplexHeatmap

#54 lcolladotor opened 7 months ago
0
Add support for visualizing stitched capture areas

#53 lcolladotor opened 7 months ago
0
Improve code coverage

#52 lcolladotor opened 7 months ago
0
[BUG] run_app() error in frame_limits in newer R version

#51 erkinacar5 closed 8 months ago
1
[BUG] An error when using registration_wrapper().

#50 GGFranck closed 8 months ago
0
[Feature Request] Enable Biocparallel-based execution of registration_wrapper steps

#49 berniejmulvey closed 10 months ago
3
[Feature Request] registration_wrapper(): create and check validity of eventual pseudobulk factor names before starting

#48 berniejmulvey opened 11 months ago
3
[BUG] fetch_data(type = "spe") yields "Error: Other 'type' values are not supported."

#47 george-hall-ucl closed 10 months ago
1
Add spatial registration vignette

#46 lahuuki closed 1 year ago
0
Want to download the full real data (spe) to use

#45 zhang-TD closed 1 year ago
1
In gene_set_enrichment use alternative greater

#44 lahuuki closed 1 year ago
0
Color Blending for NA values in `vis_clus`

#43 boyiguo1 closed 10 months ago
3
Update document of `sampleid` argument in viz_clus

#42 boyiguo1 closed 1 year ago
2
[BUG] Errors are shown when you select a gene for which there are no modeling results

#41 lcolladotor closed 2 years ago
0
[BUG] Cannot resume manual annotation

#40 lcolladotor closed 2 years ago
2
Trouble loading two gene sets

#39 abspangler13 closed 2 years ago
1
problem with read10xVisiumWrapper function

#38 abspangler13 closed 2 years ago
1
an error when use check_sce() function

#37 SiyuanHuang1 closed 2 years ago
6
Rename SpatialImage to VirtualSpatialImage class

#36 lmweber closed 2 years ago
0
Error in BiocFileCache::bfcrpath(bfc, url)

#35 SiyuanHuang1 closed 2 years ago
3
Add an `n` argument to `layer_stat_cor()`.

#34 lcolladotor closed 2 years ago
0