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LieberInstitute
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spatialLIBD
Code for the spatialLIBD R/Bioconductor package and shiny app
http://LieberInstitute.github.io/spatialLIBD/
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Add an `n` argument to `layer_stat_cor()`.
#34
lcolladotor
closed
2 years ago
0
Add functions for running statistical models
#33
lcolladotor
closed
1 year ago
18
Check default shiny app color code
#32
lcolladotor
closed
2 years ago
1
Improve the code for when `key` is present
#31
lcolladotor
closed
2 years ago
0
Error when downloading the dataset
#30
lero1005
closed
2 years ago
6
spatialData deprecation and missing 'outs/' directory
#29
lmweber
closed
2 years ago
2
Spot diameter enhancements
#28
lcolladotor
closed
2 years ago
4
Error when using shiny 1.7.1
#27
lmweber
closed
2 years ago
3
Reset image edit options
#26
lcolladotor
closed
2 years ago
0
Add support for more than one image per sample
#25
lcolladotor
closed
2 years ago
2
shiny updates break the app in spatialLIBD
#24
lcolladotor
closed
2 years ago
0
Add option to invert gene color scale order
#23
lcolladotor
closed
2 years ago
0
Add more gene color scales
#22
lcolladotor
closed
2 years ago
1
Can we increase the brightness?
#21
lcolladotor
closed
2 years ago
3
Change transparency of the spots
#20
lcolladotor
closed
2 years ago
0
Side by side
#19
lcolladotor
closed
2 years ago
3
Duplicated colnames in count matrix
#18
patrickCNMartin
closed
2 years ago
1
Show top marker genes per model for the layer-level results
#17
lcolladotor
closed
2 years ago
1
library(spatialLIBD)
#16
cfyy
closed
3 years ago
2
Subset and plotting issue with vis_gene()
#15
Dimitri-Sid
closed
3 years ago
0
Cannot plot annotations/discrete variables
#14
dimitriDA
closed
2 years ago
2
[BUG] Possible missing data through R interface
#13
Nick-Eagles
closed
3 years ago
1
Wrong SpatialExperiment version loaded from pkgload
#12
Yifath7
closed
3 years ago
3
check_spe() considerations
#11
jvelezmagic
closed
3 years ago
2
SpatialExperiment::spatialData(as_df=TRUE) now returns a DFrame not a data.frame
#10
jvelezmagic
closed
3 years ago
0
Disable the layer-level portion if it's not needed
#9
lcolladotor
closed
3 years ago
0
Enable support of user-provided documentation files for the shiny app
#8
lcolladotor
closed
3 years ago
0
How to use spatialLIBD with other data
#7
lcolladotor
closed
3 years ago
3
Implement a check_spe() function
#6
lcolladotor
closed
3 years ago
0
Investigate if it's possible to pass grob to plotly
#5
lcolladotor
closed
3 years ago
3
Installation problems
#4
carlosf79
closed
4 years ago
1
Explain clusters at the spot and layer-level
#3
lcolladotor
closed
3 years ago
0
shinyapps.io settings
#2
lcolladotor
closed
3 years ago
3
Plotly zoom: histology background image is not zoomed
#1
lcolladotor
closed
3 years ago
3
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