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LieberInstitute
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spatialLIBD
Code for the spatialLIBD R/Bioconductor package and shiny app
http://LieberInstitute.github.io/spatialLIBD/
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[BUG] fetch data spe failed
#84
hym97
closed
2 weeks ago
4
[BUG] Reporting of Missing Genes in Spot Plots multi-gene functionality
#83
cyntsc
opened
2 months ago
1
Stitched plotting
#82
lcolladotor
closed
2 months ago
0
[Feature Request] Host Visium LS data through `fetch_data()`
#81
Nick-Eagles
closed
2 months ago
0
[BUG] vis_grid_clus cannot handle logical variables
#80
lahuuki
closed
2 months ago
1
[BUG] Fail to obtain the spe data of DLPFC
#79
YikaiLou
closed
3 months ago
4
Add metric QC function
#78
lahuuki
closed
2 months ago
0
[BUG] `sort_clusters` creates arbitary numeric seqences as legend labels in `vis_grid_clus` plots.
#77
boyiguo1
closed
2 months ago
1
upload multiple Visium samples to the spatialLIBD shiny app
#76
cathalgking
opened
5 months ago
3
shiny_updates issues
#75
lcolladotor
closed
5 months ago
4
Unable to deploy iSEE app to Shinyapps.io
#74
RyAMiller
closed
5 months ago
1
Fail to obtain the spe data of DLPFC through fetch_data()
#73
YSPeng1225
closed
5 months ago
6
[BUG] Error during extract and reformat enrichment results when using `registration_wrapper`
#72
boyiguo1
opened
8 months ago
3
Error in loading app locally
#71
dimurali93
opened
9 months ago
1
Switch to using rlang and cli
#70
lcolladotor
opened
9 months ago
0
Translate course and intro documentation to Spanish
#69
lcolladotor
opened
9 months ago
0
Design a 2 day workshop / short course
#68
lcolladotor
opened
9 months ago
0
Create video guide for spatialLIBD web applications
#67
lcolladotor
opened
9 months ago
0
Add support for inspecting colors to visual impairment + guide for choosing colors
#66
lcolladotor
opened
9 months ago
0
Allow users to write custom shiny code for web applications
#65
lcolladotor
opened
9 months ago
0
Determine limits of dataset size that can be supported by shinyapps.io + document Amazon AWS deployment
#64
lcolladotor
opened
9 months ago
0
Expand utilities for exploring spatial data
#63
lcolladotor
opened
9 months ago
0
Modularize interactive code
#62
lcolladotor
opened
9 months ago
0
Add support for non-Visium data and/or SpatialFeatureExperiment
#61
lcolladotor
opened
9 months ago
3
Enhance frame limit detection
#60
lcolladotor
opened
9 months ago
0
Create guide for shinyapps.io deployment
#59
lcolladotor
opened
9 months ago
0
Refactor guide for external datasets
#58
lcolladotor
opened
9 months ago
0
Add support for dream by Gabriel Hoffman
#57
lcolladotor
opened
9 months ago
0
Improve data access organization and documentation
#56
lcolladotor
opened
9 months ago
0
Deposit published data on ExperimentHub
#55
lcolladotor
opened
9 months ago
0
Use ComplexHeatmap
#54
lcolladotor
opened
9 months ago
0
Add support for visualizing stitched capture areas
#53
lcolladotor
opened
9 months ago
0
Improve code coverage
#52
lcolladotor
opened
9 months ago
0
[BUG] run_app() error in frame_limits in newer R version
#51
erkinacar5
closed
10 months ago
1
[BUG] An error when using registration_wrapper().
#50
GGFranck
closed
10 months ago
0
[Feature Request] Enable Biocparallel-based execution of registration_wrapper steps
#49
berniejmulvey
closed
12 months ago
3
[Feature Request] registration_wrapper(): create and check validity of eventual pseudobulk factor names before starting
#48
berniejmulvey
opened
1 year ago
3
[BUG] fetch_data(type = "spe") yields "Error: Other 'type' values are not supported."
#47
george-hall-ucl
closed
1 year ago
1
Add spatial registration vignette
#46
lahuuki
closed
1 year ago
0
Want to download the full real data (spe) to use
#45
zhang-TD
closed
1 year ago
1
In gene_set_enrichment use alternative greater
#44
lahuuki
closed
1 year ago
0
Color Blending for NA values in `vis_clus`
#43
boyiguo1
closed
1 year ago
3
Update document of `sampleid` argument in viz_clus
#42
boyiguo1
closed
1 year ago
2
[BUG] Errors are shown when you select a gene for which there are no modeling results
#41
lcolladotor
closed
2 years ago
0
[BUG] Cannot resume manual annotation
#40
lcolladotor
closed
2 years ago
2
Trouble loading two gene sets
#39
abspangler13
closed
2 years ago
1
problem with read10xVisiumWrapper function
#38
abspangler13
closed
2 years ago
1
an error when use check_sce() function
#37
SiyuanHuang1
closed
2 years ago
6
Rename SpatialImage to VirtualSpatialImage class
#36
lmweber
closed
2 years ago
0
Error in BiocFileCache::bfcrpath(bfc, url)
#35
SiyuanHuang1
closed
2 years ago
3
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