-
Dear amica developer team,
Thank you for developing this really useful tool. The design and implementation of the shiny app is nicely done.
Have you tested amica for DIA data? In particular, I am …
-
Hello,
I have encountered the same error as what I reported last week again, with a smaller file size (~36 MB).
The task ID is 6C071F4C874D0FB5BE0D184D52E91925 and here is the error message:
…
-
- Describe the issue or question:
-
dear developers
I am trying to use analysis acquired in DIA to build SpectraLibrary and do quantification using DIANN. Unfortunately, as you can see from the lo…
-
Thanks for developing this great tool. I am just wondering about the usability of LFQ-Analyst for DIA data generated by Spectronaut. Can we modify the DIA report as input to LFQ-Analyst?
Thanks
-
Another question, I have noticed that you have only uploaded the peptide quantification results but not protein quantification results in the OSF repository (https://doi.org/10.17605/OSF.IO/6G3UX). H…
-
Hi, Vadim
Sorry t bother you again, but I didn't figure out one question and I would like to consult you again. How do you compare the protein quantification precision using LFQbench with the pepti…
-
Hello there and thanks for the great software!
I was wondering whether it would be feasible for you to add the peptide start (and optionally also end) position in relation to the fasta sequence? Sp…
-
Good day,
I try predict a spectral library for Wheat, which is too large (> 300 MB) for directly uploading it into the Prosit web version, so I split the large csv. file into smaller csv. files. I …
-
Hi,
For the DIA quantification data, the long-format output I got from Spectronaut contains ProteinName, PeptideSequence, PrecursorCharge, FragmentIon, ProductCharge, IsotopeLabelType, Condition, B…
-
Thank the developer for this plugin.
If my files are not from Spectronaut, there is no PEP.peptideposition column.
But we have stripped peptide sequences in our results, and I think PEP.peptidep…