kusterlab prosit issues

kusterlab / prosit

Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful for your research, please cite "Gessulat, Schmidt et al. 2019" DOI 10.1038/s41592-019-0426-7

https://www.proteomicsdb.org/prosit/

Apache License 2.0

85 stars 45 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

This task ID is unkown. Please check if your task has another URL or re-submit your task.

#105 anfoss opened 1 year ago
1
Please make sure that your uploaded "msms.txt" is also named "msms.txt"

#104 polklin closed 1 year ago
0
Is this project abandoned? No responses in issue tracker since 2020 and it's 2023 now.

#103 chhh opened 1 year ago
3
Python API to get MS2 predicted spectra

#102 issararab closed 1 year ago
2
dlib downloads on the website don't work - Error 500

#101 chhh closed 1 year ago
1
TMT model files not compatible with Prost codes provided here

#100 cctsou opened 1 year ago
0
training with customized datasets

#99 blackjack-uic opened 1 year ago
0
Which Columns Used From msms.txt for CE Calibration

#98 kostrouc opened 1 year ago
0
adds requirements.txt file

#97 enric-serra-sanz closed 1 year ago
1
error":"Error: HttpClient.getResponse: Can't get the response from the server

#96 chinmayaNK22 opened 1 year ago
0
urllib.error.HTTPError: HTTP Error 404: Not Found

#95 frankligy opened 1 year ago
0
Prosit for No Enzyme searches

#94 subinamehta opened 2 years ago
0
Error with spectral prediction

#93 yangkl96 closed 2 years ago
1
Prosit rescoring on own server

#92 mezarino opened 2 years ago
1
Prosit Download showing server issues

#91 subinamehta closed 2 years ago
3
"Can't get the response from the server"

#90 phil812 closed 2 years ago
1
Is there a way to run Prosit on Jupyter Notebook (Google Collab)?

#89 ec-ho-ra-mos opened 2 years ago
0
Unable to download spectral library

#88 LeeSCantrell closed 2 years ago
1
Error when running TMT models

#87 yangkl96 closed 2 years ago
2
Percolator subset-max-train Flag

#86 jamc1996 opened 2 years ago
0
Error log which non-ncbi database

#85 phil812 opened 2 years ago
0
Missing config.yml from Prosit-TMT model files

#84 cctsou closed 2 years ago
6
How to run prosit locally in high performance computing environment?

#83 Hendricks27 closed 2 years ago
1
Please make sure that your uploaded "msms.txt" is also named "msms.txt"

#82 yangkl96 closed 2 years ago
8
Error code gotten in one of 20 parts

#81 phil812 closed 2 years ago
1
Missing predictions for some peptides under length 30

#80 yangkl96 closed 2 years ago
0
MSP files "Num peaks" always reporting 174 peaks

#79 yangkl96 closed 2 years ago
4
Expected time for job completion on server, and related feature request

#78 yangkl96 closed 2 years ago
5
intensities_raw in .hdf5 file is different from msms.txt in .zip file

#77 yxwang97 closed 2 years ago
1
An error occurred. Status code 2

#76 fchu763 closed 3 years ago
1
Error occured. Status code: 2

#75 phil812 closed 3 years ago
6
Prosit prediction is not deterministic on RTX3070

#74 courcelm closed 3 years ago
3
Output file is not aligned with the example

#73 gusye1234 closed 2 years ago
1
Predict not carbamidomethylated samples

#72 phil812 opened 3 years ago
0
Prosit's dependencies incompatible with institute HPC's security policy

#71 BenSamy2020 closed 3 years ago
1
Server down?

#70 MarcIsak closed 3 years ago
5
Server down?

#69 MarcIsak closed 3 years ago
2
Current web version seems broken...

#68 zrolfs closed 3 years ago
1
Modifications in non-tryptic data

#67 kevinkovalchik closed 3 years ago
2
Create Training dataset – Training Prosit on my own data.

#66 ekvall93 opened 3 years ago
0
Failed to call ThenRnnForward with model config

#65 nicorellius opened 3 years ago
0
API for Prosit predictions

#64 MarcIsak closed 3 years ago
2
Error in online version

#63 bjgprt closed 3 years ago
1
Prosit error : server proteomicsdb.org:8500 unavailable with Skyline

#62 MS4MS closed 3 years ago
1
Mass shift for CAM appears to have changed in predicted libraries

#61 jacoblippincott opened 3 years ago
0
iRT

#60 MS4MS opened 3 years ago
0
Isotope distribution isn't taken into account

#59 funger1990 closed 3 years ago
0
'float' object has no attribute 'replace'

#58 im281 opened 3 years ago
0
Referencing ticket # 55

#57 im281 opened 3 years ago
0
Found Elements: {x}") NameError: name 'x' is not defined make: *** [grpc_predict] Error 8

#56 MS4MS closed 3 years ago
6