kusterlab prosit issues

kusterlab / prosit

Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful for your research, please cite "Gessulat, Schmidt et al. 2019" DOI 10.1038/s41592-019-0426-7

https://www.proteomicsdb.org/prosit/

Apache License 2.0

85 stars 45 forks source link

issues

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output format

#55 im281 closed 3 years ago
2
R version

#54 apologize965 opened 3 years ago
0
HEK293 specific fasta file?

#53 Clovernana closed 3 years ago
1
An error occured so many times when I try to use Prosit to predict spectrum library.So I need your help!

#52 Clovernana closed 4 years ago
3
Include description of correct features (i.e. -D parameter) in Percolator

#51 MiguelCos opened 4 years ago
2
How to add other fixed motification except for Cysteine with carbamidomethylation？

#50 xiangrong7 closed 4 years ago
1
iRT definition

#49 hcji closed 4 years ago
1
error message: Unknown Element in string: {sequence}. Found Elements: {x}") NameError: name 'x' is not defined make

#48 gsaxena888 opened 4 years ago
9
Error when creating a Prosit predicted library

#47 jacoblippincott closed 4 years ago
9
add shape keyword to the add_weigth function

#46 bgruening opened 4 years ago
1
Installing Prosit

#45 MiguelCos closed 4 years ago
1
Protein inference - Protein FDR/PEP calculation

#44 MiguelCos closed 4 years ago
2
Issues with the web server for predictions?

#43 MarcIsak closed 4 years ago
2
test

#42 tkschmidt closed 4 years ago
0
Unsupported amino acids should ideally yield warnings, not crash the program

#41 fburic opened 4 years ago
3
Rescoring Error: "need at least one array to concatenate make"

#40 rababerladuseladim closed 4 years ago
3
Why do some entries have a paranthesis after the fragment charge state?

#39 gsaxena888 closed 4 years ago
2
Error log 2

#38 MS4MS closed 4 years ago
2
PTMs in spectral libraries

#37 chemTG closed 4 years ago
1
Incorrect file extension in a Model iRT file on figshare

#36 jenkinsc11 closed 4 years ago
1
Predict without Cysteine Carbamidomethylation

#35 jmueller95 closed 4 years ago
2
CE calibration and rescoring

#34 zerodarkzone closed 4 years ago
2
An error occured. Status code: 2

#33 MS4MS closed 4 years ago
1
Predicted b/y-ions with ammonia or water loss

#32 MarcIsak closed 4 years ago
1
Error in building model

#31 chinmayaNK22 closed 4 years ago
5
Peaks Missing in Resulting DLIBs and Intermediate File Size Differences

#30 nicorellius closed 4 years ago
3
Download of the human library not working

#29 evaresio closed 5 years ago
2
Trouble downloading finished Prosit Data

#28 jacoblippincott closed 5 years ago
2
Memory mapped data loading

#27 mlgill closed 5 years ago
5
Error while calibrating with msms.txt and raw file from orbitrap

#26 trinidadmartin closed 5 years ago
4
iRT released training dataset does not contain cysteine

#25 mantouRobot closed 4 years ago
2
msp libraries building method

#24 mantouRobot closed 5 years ago
1
Figshare model.yaml vs model.yml naming convention

#23 tobigithub closed 5 years ago
1
Problems of training iRT prediction model from scratch using released data

#22 wj-zhang closed 5 years ago
4
prosit does not release memory

#21 tobigithub closed 5 years ago
5
Collision Energy Optimization

#20 jonasfoe closed 5 years ago
1
trained set to be true for prediction

#19 tkschmidt closed 5 years ago
1
setup.py not include the 'converters '

#18 mantouRobot closed 5 years ago
1
Predicted iRTs are concentrated within a very narrow range

#17 younglululu closed 5 years ago
7
Rescoring only allowing one RAW-file in the MAxQuant search

#16 MarcIsak closed 5 years ago
8
Submitted 42 peptides at 12PM, Jun. 28, 2019. The task is still in progress.

#15 fcyu closed 5 years ago
4
Develop

#14 gessulat closed 5 years ago
0
Web site spectral library generation - cysteine residue mass

#13 karlssoc closed 5 years ago
7
prosit prediction benchmark

#12 tobigithub closed 5 years ago
5
Web site and singularity

#11 andrewjmc closed 5 years ago
4
handling of sequences with more than 30 amino acids

#10 tobigithub closed 5 years ago
3
handling of uncommon amino acids

#9 tobigithub closed 5 years ago
2
prosit interactive mode works while server mode fails

#8 tobigithub closed 5 years ago
5
Tensor("prediction_target:0", shape=(?, ?), dtype=float32) must be from the same graph as Tensor("prediction/BiasAdd:0", shape=(?, 1), dtype=float32)

#7 Zethson closed 5 years ago
5
My cluster have Singularity but no Docker. Can I run prosit within Singularity by modifying some configs?

#6 barwe closed 5 years ago
1

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