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Hello Dr. Liu,
Thank you for creating such a great tool and keeping it updated. I am trying to perform assembly of TCR with my spatial transcript data in single cell mode. However, since the size o…
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In my application I have need downstream of the "full" TCR sequence, including leader all the way to the constant region. Is it conceivable to alter the references (pad out further into the leader) to…
jfass updated
5 years ago
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@showteeth,
I have a following count table (data.table obj) ;
```
p
TCR.clonotype count
1: clonotype1 29
2: clonotype2 22
3: clonotype3 19
4: c…
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Hi,
We have tried using Q3 and TMM normalisation for DSP WTA data. But when it comes to TCR spike-in add-on data, which normalisation methods (Q3, TMM or Poisson threshold model based normalisati…
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Thank you for this tool! I'm excited to see how it works.
I'm currently trying to run it on a dataset with 207K cells and 46 CITE-Seq antibodies. I have 18 10X lanes merged into one object. From th…
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@aqzas @Huffyphenix ,
I am using CATT to extract TCR/BCR information from data from scRNA-seq of immune cells, involving more than 100 datasets. Your article gives a performance comparison of each to…
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Hi, it's an awesome tool. I have some PDB files of TCR:pMHC complexes, therefore I have the sequences for each TCRα, TCRβ, MHC, and peptide. However, I don't have the names for V, J, CDR3, etc. Is it …
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i try your git tree on qemu, but it cannot go into shell, here is log:
starting xv6 for ARMv8...
Implementer: ARM Limited
Current EL: EL1
Flushing TLB and Instr Cache
Setting Memory Attribute I…
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# Lines of code
https://github.com/code-423n4/2023-10-badger/blob/f2f2e2cf9965a1020661d179af46cb49e993cb7e/packages/contracts/contracts/LiquidationLibrary.sol#L80-L98
https://github.com/code-423n4/20…
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Hi,
I find the relevant training code is provided in this file `test/code/ternary_train_model_pMTnet.py`. However there are still some missing parts. Could you help with the following questions?
…