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Teichlab
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tracer
TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data
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Igblastn error for Human and not for Mouse
#129
Kfirinb
opened
1 month ago
0
Bump cryptography from 38.0.3 to 41.0.6
#128
dependabot[bot]
opened
8 months ago
0
Bump cryptography from 38.0.3 to 41.0.4
#127
dependabot[bot]
closed
8 months ago
1
Bump future from 0.18.2 to 0.18.3
#126
dependabot[bot]
opened
9 months ago
0
Bump scipy from 1.9.3 to 1.10.0
#125
dependabot[bot]
opened
9 months ago
0
Some issues at Trinity Phase 1 about insilico_read_normalization.pl
#124
lsy5011
opened
10 months ago
0
tracer summarise fails with uninformative error
#123
svalkiers
opened
10 months ago
1
AssertionError during tracer installation
#122
svalkiers
closed
10 months ago
6
Output CDR3 all is NA
#121
RuonanTian
opened
1 year ago
0
How to match my TCR sequence reported by TraCer with my 10X Cellranger vdj output Clonalcall?
#120
MugenQin
opened
1 year ago
0
Updating versions and repo layout
#119
SimonDMurray
closed
9 months ago
0
Tracer assemble gives two chains with identical CDR3 sequence as different
#118
diitaz93
opened
2 years ago
0
Running TraCeR on single-cell PacBio data
#117
ndrubins
closed
2 years ago
0
Can tracer skip assemble
#116
TangLabsysu2020
opened
2 years ago
1
Java DISPLAY variable error when running tracer
#115
tiagobrc
opened
2 years ago
1
very low overall alignment rate with bowtie2
#114
noorisotoudeh
closed
3 years ago
9
removed Bio Alphabet from dependencies. 'tracer test' fails because o…
#113
NathanSiemers
opened
3 years ago
0
Newer python versions and Bio Alphabet
#112
NathanSiemers
opened
3 years ago
5
Running tracer on 10x Genomics data
#111
abiswas97
closed
3 years ago
1
Fix paper URL
#110
gokceneraslan
closed
3 years ago
0
Running containerized tracer using singularity
#109
carlo-deintinis
opened
3 years ago
4
a ZeroDivisionError
#108
zhouxinseeu
closed
3 years ago
10
Got an error in Running Kallisto
#107
zhouxinseeu
closed
3 years ago
2
TraCeR integration with R-based tools
#106
andresnoe
closed
3 years ago
2
IGBLAST stops working with message: WORKER: T4 BATCH # 1 CEXCEPTION: Error pre-fetching sequence data and WORKER: T2 BATCH # 1 CEXCEPTION: Attempt to access NULL pointer.
#105
jessicagamio
opened
3 years ago
2
Specify biopython v1.77
#104
mstubb
closed
3 years ago
0
Bio.Alphabet has been removed from Biopython
#103
cramirezs
closed
3 years ago
5
trinity_kmer_length config option not working
#102
HumzaHemani
opened
3 years ago
1
Docker fixes
#101
mstubb
closed
4 years ago
0
Update are version in docker file
#100
mstubb
closed
4 years ago
0
version of TraCeR in docker container
#99
orrzor
closed
4 years ago
4
question about repertoire coverage/bias
#98
jfx319
opened
4 years ago
0
small test data
#97
wangjiawen2013
closed
4 years ago
1
Bump pyxdg from 0.25 to 0.26 in /docker_helper_files
#96
dependabot[bot]
closed
4 years ago
0
TraCeR on 10X cellranegr vdj output filtered_contig.fasta demultiplexed files
#95
arutik
opened
4 years ago
8
OSError: Required binary not found: bowtie2
#94
gh22333
closed
3 years ago
5
questions about input file and <cell_name> parameter
#93
AlfredShawn
closed
4 years ago
1
calling a deletion in IGK-J with igbalst 1.12.0
#92
HLAmolec
closed
5 years ago
8
Tracer clonotype network output
#91
Meng0625
closed
4 years ago
3
KeyError message in assemble
#90
micans
opened
5 years ago
5
add procps to packages
#89
micans
closed
5 years ago
1
Include leader sequences in assembly?
#88
jfass
opened
5 years ago
1
Tracer using Singularity
#87
tiagobrc
closed
5 years ago
1
Running "tracer test -p 1 -c tracer.config" problem with dot
#86
solyris
closed
5 years ago
1
problem understanding tracer output
#85
hkoohy
closed
5 years ago
5
tracer 0.6 test fails in summarise stage:
#84
hkoohy
closed
5 years ago
4
updated FTP links in Dockerfile
#83
redst4r
closed
5 years ago
1
ambiguity in clonotype assignment
#82
lincoln-harris
closed
5 years ago
7
FutureWarning: in the final step of ##Filtering by read count##
#81
SeadonXing
opened
5 years ago
0
Add IGDATA environmental variable
#80
anton-khodak
closed
3 years ago
1
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