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Teichlab
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tracer
TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data
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Build iss78
#79
mstubb
closed
5 years ago
0
issue with build
#78
mhassan
closed
5 years ago
14
Adding assembled_file option assembly process
#77
JohnMCMa
opened
6 years ago
1
Failed running test with No successful Trinity assemblies
#76
ruqianl
closed
6 years ago
5
Tracer summarise output
#75
YarsnC
opened
6 years ago
3
Regenerate test output with new CDR3 code
#74
mstubb
opened
6 years ago
0
Add cdr3 nucleotide sequences
#73
dcroote
closed
6 years ago
17
multiple TCR A/B for same cell?
#72
lincoln-harris
closed
6 years ago
1
Assembly methodology question
#71
lincoln-harris
closed
6 years ago
3
Running igblast returns an error
#70
ghost
opened
6 years ago
5
naive question about tracer
#69
GuidoLeoni
closed
6 years ago
3
test data not being reproduced
#68
robertamezquita
closed
6 years ago
7
IgBLAST update in Docker image?
#67
wyattmcdonnell
opened
6 years ago
10
Running docker image with test data fails.
#66
gitbuckley
closed
6 years ago
4
igblastn and igblastp return an error
#65
comrade1809
opened
6 years ago
13
updates for Trinity v2 w/ short reads
#64
brianjohnhaas
closed
6 years ago
0
check for undefined query_name
#63
joshua-gould
closed
6 years ago
0
Improve --loci argument options
#62
mstubb
opened
6 years ago
2
Difference in synthetic recombinome between tracer v0.4 and v0.5
#61
orrzor
closed
6 years ago
11
Issue with tracer test
#60
Edenapple
opened
6 years ago
1
tracer breaks down after kallisto
#59
tiagobrc
closed
5 years ago
10
demultiplex fastq files for individual cells from the single cell RNA seq data
#58
lilycanfly
closed
6 years ago
8
README doesn't mention `--loci` option
#57
mstubb
closed
6 years ago
0
configparser missing from requirements.txt
#56
krishnaroskin
closed
6 years ago
3
Error when running the test
#55
anne-marie-lyne
closed
6 years ago
9
Add '/1' to headers of single-end fastq files for compatibility with Trinity
#54
idalind
closed
6 years ago
1
Add compatibility with Networkx v2.0
#53
mstubb
opened
6 years ago
2
Fix setup
#52
idalind
closed
6 years ago
0
resources_dir is determined incorrectly
#51
moskalenko
closed
6 years ago
1
Docker
#50
mstubb
closed
6 years ago
0
Adding docker container
#49
mstubb
closed
6 years ago
0
igblast setup
#48
oeco28
opened
7 years ago
6
Conda package for tracer
#47
sebastian-luna-valero
opened
7 years ago
4
CDR3
#46
livnatje
closed
6 years ago
17
removed the choices restriction on summarise
#45
boombard
closed
7 years ago
0
removed species choice restriction in arguments
#44
boombard
closed
7 years ago
0
Environmental config
#43
boombard
closed
7 years ago
0
added the test_data to the python setup
#42
boombard
closed
7 years ago
0
added an option to point to the config file in an environmental variable
#41
boombard
closed
7 years ago
0
Tracer Summarise failed when plotting reconstructed lengths
#40
mn120110d
closed
7 years ago
3
Tracer summarise returning KeyError
#39
mn120110d
closed
7 years ago
3
igblast error
#38
baj12
closed
7 years ago
2
Small index
#37
ro36
closed
7 years ago
2
fixed typos in the collapse function
#36
boombard
closed
7 years ago
0
changed setup.py to the right version and formatted the README.
#35
boombard
closed
7 years ago
0
Make implementing_build the new master
#34
boombard
closed
7 years ago
0
Implementing build
#33
boombard
closed
7 years ago
0
Installing tracer does not create a tracer python package
#32
carandraug
closed
7 years ago
6
added failsafe for configparse import
#31
boombard
closed
7 years ago
0
Salmon
#30
ro36
closed
7 years ago
0
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