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Teichlab
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tracer
TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data
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Add salmon as an alignment option
#29
boombard
closed
7 years ago
0
added a function that generates a cell matrix, with a requisite test
#28
boombard
closed
7 years ago
0
forced max junction length argument to int
#27
boombard
closed
7 years ago
0
the check for invariant cells broke G / D summarisation
#26
boombard
closed
7 years ago
0
fixed the entry point for the setup.py script
#25
boombard
closed
7 years ago
0
removed redundant dirname lines
#24
boombard
closed
7 years ago
0
Typo in launcher.py
#23
afonsoguerra
closed
7 years ago
2
Make work with IgBLAST v1.6.1
#22
mstubb
closed
7 years ago
0
tracer crashes after Kallisto
#21
zji90
closed
7 years ago
5
Issue running on windows
#20
baracus37
closed
7 years ago
12
updated some tests that stopped working with the updates
#19
boombard
closed
8 years ago
0
fixed some compatibility issues with python 3
#18
boombard
closed
8 years ago
0
Testing build
#17
boombard
closed
8 years ago
0
Add support for IgBLAST versions above v1.4.0
#16
mstubb
closed
8 years ago
3
tracer crashes after IgBLAST
#15
prefectus
closed
8 years ago
3
Build module
#14
boombard
closed
7 years ago
0
Build module
#13
boombard
closed
8 years ago
0
Work with gamma-delta T cells
#12
mstubb
closed
7 years ago
1
Implement `build` module for custom reference files
#11
mstubb
closed
7 years ago
0
Check fastq exists
#10
boombard
closed
8 years ago
0
Installation instructions
#9
boombard
closed
8 years ago
0
Is there a docker file?
#8
Krewn
closed
8 years ago
2
Using Mouse C-region when organism is set to human
#7
haseley
closed
8 years ago
7
Add unit tests
#6
boombard
closed
8 years ago
0
File naming adjustments in order to support Trinity2
#5
rbagd
closed
8 years ago
2
Fix bowtie2 not resuming on single end data.
#4
rbagd
closed
8 years ago
1
Make TraCeR work with Trinity v2
#3
mstubb
closed
8 years ago
5
added a setup.py file as well as pip requirements.txt
#2
boombard
closed
8 years ago
0
IgBlast fails if IGDATA is not set
#1
rbagd
closed
8 years ago
1
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