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**Topic:** Transcriptomics, Title: De-novo transcriptome reconstruction with RNA-Seq
**Tutorial Link:** http://galaxyproject.github.io/training-material/topics/transcriptomics/tutorials/de-novo/tutor…
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Hi,
I was looking for the denovo transcripts in finspector.gmap_trinity_GG.fusions.fasta and I couldn't find the transcripts for two fusions from STAR-Fusion: one being in-frame and other is not de…
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Hi,
Hi, I'm getting an error running the following command in PASA:
`perl Launch_PASA_pipeline.pl --config alignAssembly.config --ALIGNERS blat,gmap --create --run --genome genome.fasta --CPU 20…
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Just encountered another dependency error in STAR-Fusion when running with FusionInspector options. (https://github.com/bioconda/bioconda-recipes/issues/16759 was just fixed)
https://github.com/bi…
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Hello Sebatian,
I am writing to you because I have started using arriba (beautiful tool BTW) and the output of the translation feature of Arriba (called by the _-P_ parameter) is a bit unclear to m…
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Each group member should have access to communication log for the current protocol run to get messages needed for complaint resolutions.
nkuba updated
5 years ago
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I would like to add additional RNA-Seq pipelines and other alternatives such as aligners, quantifiers, trimmers, or qc statistics for using in bcbio.
Is there a wiki or section on how to contribu…
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1.I want obtain a high quality transcript. Through the manual, I think the full length trinity transcript is my type.
2.According to my understand, the percent of the hit's length included in the ali…
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I ran `run_mash.py -k 30 --cpus 10 demux_tsujii_2cells.polished.hq.fasta` and `process_kmer_to_graph.py --sim_threshold 0.10 demux_tsujii_2cells.polished.hq.fasta demux_tsujii_2cells.polished.hq.fasta…
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Hi,
have you used Cogent on Nanopore RNA-Seq data where the raw-read errors are ~15%? If yes, could comment on the performance of Cogent?
Thanks