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**Is your feature request related to a problem? Please describe.**
While currently not used in the field (AFAIK) might be worth including bcftools stats for getting statistics on VCF files from genot…
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Hello! Thanks for this great tool. I used pip to install but when I ran
vcfstats --vcf examples/sample.vcf \
--outdir examples/ \
--formula 'COUNT(1) ~ CONTIG' \
--title 'Number of variants o…
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Hello all,
would it be possible to have rtg vcfstats too?
Name of tool: rtg vcfstats
Tool homepage: https://github.com/RealTimeGenomics/rtg-tools
log:
```
Location …
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There seems to be a problem with the call to MSVC cl.exe that gets triggered during the install of this software. On a fresh install of Python 3.9.5 and the MSVC 2019 tools, I receive this error in r…
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# 生信爱好者周刊（第 4 期）：生信有一天可以得诺贝尔奖吗
这里记录每周值得分享的生信相关内容，周日发布。
本杂志开源（GitHub: [ShixiangWang/weekly](https://github.com/ShixiangWang/weekly)），欢迎提交 issue，投稿或推荐生信相关内容。
GitHub 粉们可以通过 Watch 仓库的 Release（提前）…
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### Issue
Update Mutect2 variant calling to include latest gatk (4.2.0.0) recommended best practices.
### Approach
- Update mutect2 template
- Add or modify existing templates to include post …
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Sorry this is the wrong repository. Moved it over to vcflib.
Hi,
I am using the current vcflib (downloaded on 2015/04/16) compiled in CentOS7
( CentOS Linux release 7.1.1503, kernel 3.10.0-229.1.2.el…
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First of all, thanks for the code. We are using it compare vcfs.
I get an unhandled exception when trying to run a comparison.
```
Unhandled Exception: System.ArgumentException: Invalid interva…
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vcfcleancomplex (with no options) is segfaulting on a freebayes generated vcf.
Here is a test vcf reduced down to a single failing variant line:
http://popi.ucdavis.edu/~travc/tmp/vcfcleancomplex_fail…
travc updated
3 years ago
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Hello,
I am working with vcflib and have found a memory leak in tabix. I found it from my own code, but used vcfstat as a simpler example of this happening. In a standard run of vcfstats with a tab…