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Thanks for developing this nice pipeline. I'm trying to use it for WGS data.
In the wiki page (https://github.com/cbg-ethz/NGS-pipe/wiki/Installation-&-Testing), I saw the the command lines for WGS …
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When I give projection as `"WGS84"` I get empty tiles, whereas when I use `"spherical mercator"` projection I am able to create the tiles but they wont overlay on the basemap. The tiles I get are abou…
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Draft budget here https://docs.google.com/spreadsheets/d/1JpnDkJEHfHtlA-bhIm6RkGmoBKNDG3w-JJWySaTw43M/edit?usp=sharing
Due to token price drop in Q3, we have needed to move some absolutely core activ…
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Hi-
I am looking to run 10X Multiome (sc paired RNA & ATAC) and I want to multiplex my samples and use a SNP array or WGS to demultiplex using SouporCell. I have not run the experiment yet so I was…
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Should we require a statement like
`enable wgsly.2024` in the main file? As in
- Document that this is some extended WGSL
- And have a version/edition of it. Which lets us change the syntax in late…
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源码
bd_lng = result_json["lng"].to_f
bd_lat = result_json["lat"].to_f
wgs = Coordconver.bd_wgs(bd_lng, bd_lat)
wgs_lng = wgs[0]
wgs_lat = wgs[1]
…
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### Description
In ticket: https://clinical-scilifelab.supportsystem.com/scp/tickets.php?id=70333#reply we were contacted by a clinician regarding a variant that was not called by our somatic caller …
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Hi,
When I use read.maf to read maf file, but almost variants are silent(silent variants/all variants: **16874**/17013).
I am unsure about that is annotation problem or something.
`df = read.ma…
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**Describe the issue**
I am analyzing whole genome sequencing(WGS) data in rice(Oryza.sativa) plants. When I use the following command to create the rice database, I encounter this problem. It should…
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Hi,
I am trying to use fishHook on WGS data and was trying out the analysis mentioned in the tutorial. I was able to install fishHook but when I tried to read in the mutations via
mutations.wgs = …